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Series GSE119440 Query DataSets for GSE119440
Status Public on Jan 05, 2019
Title Indole signaling at the host-microbiota-pathogen interface
Organism Escherichia coli O157:H7
Experiment type Expression profiling by high throughput sequencing
Summary RNA seq experiment was perfomed in the presence and absence of 500uM indole
 
Overall design EHEC strain 86 24 was used for this study. WT and △tnaA EHEC were grown until late log phase in low gluocse DMEM in the presence and absence of 500µM indole. RNA was extracted from these samples. The experiment was conducted with three biological replicates.
 
Contributor(s) Kumar A, Sperandio V
Citation(s) 31164470
Submission date Sep 04, 2018
Last update date Jun 24, 2019
Contact name Aman Kumar
E-mail(s) aman.kumar@utsouthwestern.edu
Organization name UT Southwestern Medical Center
Department Microbiology
Street address 5323 Harry Hines Blvd.
City Dallas
State/province Texas
ZIP/Postal code 75390-9048
Country USA
 
Platforms (1)
GPL25528 Illumina HiSeq 2500 (Escherichia coli O157:H7)
Samples (4)
GSM3374692 WM: WT EHEC
GSM3374693 TM: △tnaA EHEC
GSM3374694 WI: WT EHEC with 500µM indole
Relations
BioProject PRJNA489260
SRA SRP159530

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE119440_ALL_genes-RNA_seq.txt.gz 196.6 Kb (ftp)(http) TXT
GSE119440_Expression_wrt_WM.astar.gz 3.0 Mb (ftp)(http) ASTAR
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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