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    1700001L19Rik RIKEN cDNA 1700001L19 gene [ Mus musculus (house mouse) ]

    Gene ID: 69315, updated on 26-Jun-2021

    Summary

    Official Symbol
    1700001L19Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1700001L19 geneprovided by MGI
    Primary source
    MGI:MGI:1916565
    See related
    Ensembl:ENSMUSG00000021534
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Biased expression in testis adult (RPKM 24.4), frontal lobe adult (RPKM 3.2) and 2 other tissues See more
    Orthologs
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    Genomic context

    See 1700001L19Rik in Genome Data Viewer
    Location:
    13; 13 B3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (68745558..68762350)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (68597439..68614231)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 13 NC_000079.5 (68736316..68753108)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene VISTA enhancer mm1330 Neighboring gene 5-methyltetrahydrofolate-homocysteine methyltransferase reductase Neighboring gene FAST kinase domains 3 Neighboring gene predicted gene, 34903 Neighboring gene adenylate cyclase 2 Neighboring gene farnesyl diphosphate synthetase pseudogene Neighboring gene predicted gene, 35161 Neighboring gene predicted gene, 35049

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    located_in ciliary basal body ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein C5orf49 homolog
    Names
    Y regulated sperm protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_027035.1NP_081311.1  uncharacterized protein C5orf49 homolog

      See identical proteins and their annotated locations for NP_081311.1

      Status: PROVISIONAL

      Source sequence(s)
      AK138387
      Consensus CDS
      CCDS49306.1
      UniProtKB/Swiss-Prot
      Q9DAR0
      Related
      ENSMUSP00000022007.7, ENSMUST00000022007.8
      Conserved Domains (1) summary
      pfam15074
      Location:77166
      DUF4541; Domain of unknown function (DUF4541)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      68745558..68762350
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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