Format

Send to:

Choose Destination
    • Showing Current items.

    Gm7609 predicted pseudogene 7609 [ Mus musculus (house mouse) ]

    Gene ID: 665378, updated on 23-Jun-2021

    Summary

    Official Symbol
    Gm7609provided by MGI
    Official Full Name
    predicted pseudogene 7609provided by MGI
    Primary source
    MGI:MGI:3644536
    See related
    Ensembl:ENSMUSG00000079457
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    EG665378
    Summary
    This gene is one of several duplicated genes in a repeat cluster in the homogeneously staining region (HSR) of chromosome 1. It is an Sp100-rs gene copy, which arose by duplication following the fusion of the Csprs (component of Sp100-rs) gene and the 5' part of the Sp100 (nuclear antigen Sp100) gene. The coding sequence of this gene is intact compared to that of the Csprs gene, and therefore NCBI represents this as a protein-coding gene. However, it is also possible to interpret this fusion gene as a pseudogene of the Sp100 gene. It is unknown if this gene produces a protein in vivo. [provided by RefSeq, Mar 2011]
    Expression
    Biased expression in spleen adult (RPKM 1.7), thymus adult (RPKM 1.4) and 13 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Gm7609 in Genome Data Viewer
    Location:
    1; 1 C5
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (85177313..85193119)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (85199592..85215398)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (85196186..85210347)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA A530040E14 gene Neighboring gene Sp140 nuclear body protein pseudogene Neighboring gene predicted gene, 38510 Neighboring gene predicted gene, 53253 Neighboring gene predicted gene, 53568 Neighboring gene RIKEN cDNA C130026I21 gene Neighboring gene sp110 nuclear body protein-like Neighboring gene predicted gene, 53567

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001081746.1NP_001075215.1  component of Sp100-rs-like

      See identical proteins and their annotated locations for NP_001075215.1

      Status: VALIDATED

      Source sequence(s)
      AC123856, AC164544
      Related
      ENSMUSP00000159200.2, ENSMUST00000113402.4
      Conserved Domains (1) summary
      pfam00001
      Location:106241
      7tm_1; 7 transmembrane receptor (rhodopsin family)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      85177313..85193119
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006496523.3XP_006496586.1  component of Sp100-rs-like isoform X2

      See identical proteins and their annotated locations for XP_006496586.1

      Conserved Domains (1) summary
      pfam00001
      Location:106241
      7tm_1; 7 transmembrane receptor (rhodopsin family)
    2. XM_006496521.3XP_006496584.1  component of Sp100-rs-like isoform X1

      Conserved Domains (2) summary
      pfam00001
      Location:142277
      7tm_1; 7 transmembrane receptor (rhodopsin family)
      pfam03172
      Location:129
      HSR; HSR domain
    3. XM_006496524.3XP_006496587.1  component of Sp100-rs-like isoform X2

      See identical proteins and their annotated locations for XP_006496587.1

      Conserved Domains (1) summary
      pfam00001
      Location:106241
      7tm_1; 7 transmembrane receptor (rhodopsin family)
    4. XM_006496522.5XP_006496585.1  component of Sp100-rs-like isoform X2

      See identical proteins and their annotated locations for XP_006496585.1

      Conserved Domains (1) summary
      pfam00001
      Location:106241
      7tm_1; 7 transmembrane receptor (rhodopsin family)
    5. XM_006496525.5XP_006496588.1  component of Sp100-rs-like isoform X2

      See identical proteins and their annotated locations for XP_006496588.1

      Conserved Domains (1) summary
      pfam00001
      Location:106241
      7tm_1; 7 transmembrane receptor (rhodopsin family)
    Support Center