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    Ms4a4c membrane-spanning 4-domains, subfamily A, member 4C [ Mus musculus (house mouse) ]

    Gene ID: 64380, updated on 16-Jul-2021

    Summary

    Official Symbol
    Ms4a4cprovided by MGI
    Official Full Name
    membrane-spanning 4-domains, subfamily A, member 4Cprovided by MGI
    Primary source
    MGI:MGI:1927656
    See related
    Ensembl:ENSMUSG00000024675
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ms4a9; AI449185; 5830413L19Rik
    Expression
    Biased expression in spleen adult (RPKM 3.3), mammary gland adult (RPKM 2.1) and 7 other tissues See more
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    Genomic context

    See Ms4a4c in Genome Data Viewer
    Location:
    19; 19 A
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (11382081..11404610)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (11404717..11427246)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (11482151..11501736)

    Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene membrane-spanning 4-domains, subfamily A, member 7 Neighboring gene membrane-spanning 4-domains, subfamily A, member 4A Neighboring gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 pseudogene Neighboring gene heat shock protein 90, alpha (cytosolic), class A member 1 pseudogene Neighboring gene membrane-spanning 4-domains, subfamily A, member 4B

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    located_in Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
     
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in plasma membrane raft ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    membrane-spanning 4-domains, subfamily A, member 4C
    Names
    membrane-spanning 4-domains, subfamily A, member 9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_029499.3NP_083775.1  membrane-spanning 4-domains, subfamily A, member 4C

      See identical proteins and their annotated locations for NP_083775.1

      Status: VALIDATED

      Source sequence(s)
      AC125406, AK151045
      Consensus CDS
      CCDS29599.1
      UniProtKB/TrEMBL
      Q9D3F6
      Related
      ENSMUSP00000072512.4, ENSMUST00000072729.10
      Conserved Domains (1) summary
      pfam04103
      Location:43171
      CD20; CD20-like family

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000085.7 Reference GRCm39 C57BL/6J

      Range
      11382081..11404610
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006527250.2XP_006527313.1  membrane-spanning 4-domains, subfamily A, member 4C isoform X1

      See identical proteins and their annotated locations for XP_006527313.1

      UniProtKB/TrEMBL
      Q9D3F6
      Conserved Domains (1) summary
      pfam04103
      Location:43171
      CD20; CD20-like family
    2. XM_006527251.4XP_006527314.1  membrane-spanning 4-domains, subfamily A, member 4C isoform X1

      See identical proteins and their annotated locations for XP_006527314.1

      UniProtKB/TrEMBL
      Q9D3F6
      Related
      ENSMUSP00000113130.2, ENSMUST00000119366.2
      Conserved Domains (1) summary
      pfam04103
      Location:43171
      CD20; CD20-like family
    3. XM_017318270.2XP_017173759.1  membrane-spanning 4-domains, subfamily A, member 4C isoform X2

      Conserved Domains (1) summary
      pfam04103
      Location:1076
      CD20; CD20-like family

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_022429.1: Suppressed sequence

      Description
      NM_022429.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
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