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    Ms4a4b membrane-spanning 4-domains, subfamily A, member 4B [ Mus musculus (house mouse) ]

    Gene ID: 60361, updated on 16-Oct-2021

    Summary

    Official Symbol
    Ms4a4bprovided by MGI
    Official Full Name
    membrane-spanning 4-domains, subfamily A, member 4Bprovided by MGI
    Primary source
    MGI:MGI:1913083
    See related
    Ensembl:ENSMUSG00000056290
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ly116; Chandra; AI463180
    Expression
    Biased expression in mammary gland adult (RPKM 17.7), spleen adult (RPKM 17.5) and 7 other tissues See more
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    Genomic context

    See Ms4a4b in Genome Data Viewer
    Location:
    19; 19 A
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (11420922..11440913)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (11443558..11463549)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (11518048..11538039)

    Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 pseudogene Neighboring gene membrane-spanning 4-domains, subfamily A, member 4C Neighboring gene heat shock protein 90, alpha (cytosolic), class A member 1 pseudogene Neighboring gene membrane-spanning 4-domains, subfamily A, member 6C Neighboring gene expressed sequence BE692007 Neighboring gene predicted gene 8369

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    located_in Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
     
    located_in integral component of plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in plasma membrane raft ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    membrane-spanning 4-domains, subfamily A, member 4B
    Names
    lymphocyte antigen 116

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_021718.2NP_068364.1  membrane-spanning 4-domains, subfamily A, member 4B

      See identical proteins and their annotated locations for NP_068364.1

      Status: VALIDATED

      Source sequence(s)
      AF230640, AK080934, AK138737
      Consensus CDS
      CCDS29600.1
      UniProtKB/TrEMBL
      Q9ES61
      Related
      ENSMUSP00000046909.9, ENSMUST00000035258.10
      Conserved Domains (1) summary
      pfam04103
      Location:43171
      CD20; CD20-like family

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000085.7 Reference GRCm39 C57BL/6J

      Range
      11420922..11440913
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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