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    Fbxo41 F-box protein 41 [ Mus musculus (house mouse) ]

    Gene ID: 330369, updated on 8-Aug-2021

    Summary

    Official Symbol
    Fbxo41provided by MGI
    Official Full Name
    F-box protein 41provided by MGI
    Primary source
    MGI:MGI:1261912
    See related
    Ensembl:ENSMUSG00000047013
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    D6Ertd538; 9630017H13; D6Ertd538e
    Expression
    Biased expression in cortex adult (RPKM 14.6), frontal lobe adult (RPKM 13.2) and 7 other tissues See more
    Orthologs
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    Genomic context

    See Fbxo41 in Genome Data Viewer
    Location:
    6 C3; 6 37.48 cM
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (85446556..85479976, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (85469574..85502994, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (85419572..85452880, complement)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene SET and MYND domain containing 5 Neighboring gene protease-associated domain containing 1 Neighboring gene chaperonin containing Tcp1, subunit 7 (eta) Neighboring gene early growth response 4 Neighboring gene ALMS1, centrosome and basal body associated Neighboring gene N-acetyltransferase 8 (GCN5-related) family member 7

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001001160.3NP_001001160.1  F-box only protein 41

      See identical proteins and their annotated locations for NP_001001160.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript. Variants 1, 2, and 3 encode the same protein.
      Source sequence(s)
      AK147230, BC070445, CD774837
      Consensus CDS
      CCDS20296.1
      UniProtKB/Swiss-Prot
      Q6NS60
      UniProtKB/TrEMBL
      Q3UGY7
      Related
      ENSMUSP00000124524.2, ENSMUST00000161078.8
      Conserved Domains (5) summary
      TIGR02473
      Location:216348
      flagell_FliJ; flagellar export protein FliJ
      sd00017
      Location:1033
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00034
      Location:657683
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam12937
      Location:555593
      F-box-like; F-box-like
      pfam16515
      Location:237299
      HIP1_clath_bdg; Clathrin-binding domain of Huntingtin-interacting protein 1
    2. NM_001289674.1NP_001276603.1  F-box only protein 41

      See identical proteins and their annotated locations for NP_001276603.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate splice site and lacks an exon in the 5' UTR, compared to variant 1. Variants 1, 2, and 3 encode the same protein.
      Source sequence(s)
      AK147230, BC070445, CD774837
      Consensus CDS
      CCDS20296.1
      UniProtKB/Swiss-Prot
      Q6NS60
      UniProtKB/TrEMBL
      Q3UGY7
      Related
      ENSMUSP00000125671.2, ENSMUST00000159062.8
      Conserved Domains (5) summary
      TIGR02473
      Location:216348
      flagell_FliJ; flagellar export protein FliJ
      sd00017
      Location:1033
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00034
      Location:657683
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam12937
      Location:555593
      F-box-like; F-box-like
      pfam16515
      Location:237299
      HIP1_clath_bdg; Clathrin-binding domain of Huntingtin-interacting protein 1
    3. NM_001289675.1NP_001276604.1  F-box only protein 41

      See identical proteins and their annotated locations for NP_001276604.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) lacks an exon in the 5' UTR, compared to variant 1. Variants 1, 2, and 3 encode the same protein.
      Source sequence(s)
      AK147230, AK147681, BC070445, CD774837
      Consensus CDS
      CCDS20296.1
      UniProtKB/Swiss-Prot
      Q6NS60
      UniProtKB/TrEMBL
      Q3UGY7
      Related
      ENSMUSP00000124754.2, ENSMUST00000161546.2
      Conserved Domains (5) summary
      TIGR02473
      Location:216348
      flagell_FliJ; flagellar export protein FliJ
      sd00017
      Location:1033
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00034
      Location:657683
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam12937
      Location:555593
      F-box-like; F-box-like
      pfam16515
      Location:237299
      HIP1_clath_bdg; Clathrin-binding domain of Huntingtin-interacting protein 1

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      85446556..85479976 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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