Format

Send to:

Choose Destination
    • Showing Current items.

    Saa3 serum amyloid A 3 [ Mus musculus (house mouse) ]

    Gene ID: 20210, updated on 6-Sep-2021

    Summary

    Official Symbol
    Saa3provided by MGI
    Official Full Name
    serum amyloid A 3provided by MGI
    Primary source
    MGI:MGI:98223
    See related
    Ensembl:ENSMUSG00000040026
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Sa; l7; l7R3; Saa-3; AV098916
    Expression
    Biased expression in liver E18 (RPKM 11.8), genital fat pad adult (RPKM 2.2) and 8 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Saa3 in Genome Data Viewer
    Location:
    7 B3; 7 30.51 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (46361422..46365100, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (46711998..46719615, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (53967368..53971046, complement)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene tryptophan hydroxylase 1 Neighboring gene serum amyloid A-like 1 Neighboring gene predicted gene, 31882 Neighboring gene serum amyloid A 4

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables Toll-like receptor 4 binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables chemoattractant activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
     
    located_in extracellular space IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of high-density lipoprotein particle IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_011315.3NP_035445.1  serum amyloid A-3 protein precursor

      See identical proteins and their annotated locations for NP_035445.1

      Status: PROVISIONAL

      Source sequence(s)
      AC090122
      Consensus CDS
      CCDS21282.1
      UniProtKB/Swiss-Prot
      P04918
      Related
      ENSMUSP00000006956.8, ENSMUST00000006956.9
      Conserved Domains (1) summary
      pfam00277
      Location:23122
      SAA; Serum amyloid A protein

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      46361422..46365100 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Support Center