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    Slco3a1 solute carrier organic anion transporter family, member 3a1 [ Mus musculus (house mouse) ]

    Gene ID: 108116, updated on 16-Oct-2021

    Summary

    Official Symbol
    Slco3a1provided by MGI
    Official Full Name
    solute carrier organic anion transporter family, member 3a1provided by MGI
    Primary source
    MGI:MGI:1351867
    See related
    Ensembl:ENSMUSG00000025790
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Anr1; MJAM; OATP-D; R75096; Slc21a11; 5830414C08Rik
    Expression
    Broad expression in lung adult (RPKM 34.1), ovary adult (RPKM 22.9) and 24 other tissues See more
    Orthologs
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    Genomic context

    See Slco3a1 in Genome Data Viewer
    Location:
    7; 7 D1
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (73925166..74204528, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (74275418..74554780, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (81420304..81699666, complement)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 Neighboring gene alpha-enolase pseudogene Neighboring gene predicted gene, 53360 Neighboring gene predicted gene, 39037

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from PubChem

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    acts_upstream_of_or_within ion transport IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within oligopeptide transport ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within organic anion transport ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of NF-kappaB transcription factor activity ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of protein phosphorylation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in prostaglandin transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in prostaglandin transport ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in sodium-independent organic anion transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in apical plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in basal plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cell surface ISO
    Inferred from Sequence Orthology
    more info
     
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in integral component of plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in integral component of plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    solute carrier organic anion transporter family member 3A1
    Names
    androgen regulated protein 1
    organic anion-transporting polypeptide D
    sodium-independent organic anion transporter D
    solute carrier family 21 (organic anion transporter), member 11

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001038643.1NP_001033732.1  solute carrier organic anion transporter family member 3A1 isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) includes a 3' terminal exon that extends past a splice site used in variant 1. The resulting protein (isoform 2) is shorter and has a distinct C-terminus compared to isoform 1.
      Source sequence(s)
      AC114591, AK031280, AK037938
      Consensus CDS
      CCDS21366.1
      UniProtKB/Swiss-Prot
      Q8R3L5
      Related
      ENSMUSP00000095973.3, ENSMUST00000098371.9
      Conserved Domains (1) summary
      cd17402
      Location:39563
      MFS_SLCO3_OATP3; Solute carrier organic anion transporter 3 family of the Major Facilitator Superfamily of transporters
    2. NM_023908.2NP_076397.2  solute carrier organic anion transporter family member 3A1 isoform 1

      See identical proteins and their annotated locations for NP_076397.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer protein (isoform 1).
      Source sequence(s)
      AK031280, AK046945, AK152488
      Consensus CDS
      CCDS21367.1
      UniProtKB/Swiss-Prot
      Q8R3L5
      Related
      ENSMUSP00000026897.8, ENSMUST00000026897.14
      Conserved Domains (1) summary
      cd17402
      Location:39563
      MFS_SLCO3_OATP3; Solute carrier organic anion transporter 3 family of the Major Facilitator Superfamily of transporters

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      73925166..74204528 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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