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    sp100.1 SP110 nuclear antigen, tandem duplicate 1 [ Oryzias latipes (Japanese medaka) ]

    Gene ID: 101164156, updated on 24-Jun-2020

    Summary

    Gene symbol
    sp100.1
    Gene description
    SP110 nuclear antigen, tandem duplicate 1
    See related
    Ensembl:ENSORLG00000024128
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryzias latipes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
    Orthologs
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    Genomic context

    See sp100.1 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    103 current ASM223467v1 (GCF_002234675.1) 8 NC_019866.2 (18529411..18544284, complement)
    102 previous assembly ASM31367v1 (GCF_000313675.1) 8 NC_019866.1 (18539540..18554907, complement)

    Chromosome 8 - NC_019866.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110015508 Neighboring gene nuclear body protein SP140-like protein Neighboring gene extracellular serine/threonine protein kinase FAM20C Neighboring gene neuronal pentraxin receptor

    Genomic regions, transcripts, and products

    General protein information

    Preferred Names
    autoimmune regulator-like; nuclear body protein SP140-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM223467v1 Primary Assembly

    Genomic

    1. NC_019866.2 Reference ASM223467v1 Primary Assembly

      Range
      18529411..18544284 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020705434.2XP_020561093.1  autoimmune regulator-like isoform X2

      Conserved Domains (4) summary
      cd04369
      Location:490584
      Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
      cd15541
      Location:423468
      PHD_TIF1_like; PHD finger found in the transcriptional intermediary factor 1 (TIF1) family and similar proteins
      pfam01342
      Location:184256
      SAND; SAND domain
      pfam03172
      Location:8107
      HSR; HSR domain
    2. XM_020705435.2XP_020561094.1  nuclear body protein SP140-like protein isoform X3

      Related
      ENSORLP00000044626.1, ENSORLT00000043352.1
      Conserved Domains (5) summary
      cd04369
      Location:488580
      Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
      cd15541
      Location:413458
      PHD_TIF1_like; PHD finger found in the transcriptional intermediary factor 1 (TIF1) family and similar proteins
      pfam01342
      Location:184256
      SAND; SAND domain
      pfam03172
      Location:8107
      HSR; HSR domain
      cl02536
      Location:324386
      SAND; SAND domain
    3. XM_011478452.3XP_011476754.1  autoimmune regulator-like isoform X1

      Related
      ENSORLP00000026977.1, ENSORLT00000027733.1
      Conserved Domains (5) summary
      cd04369
      Location:498590
      Bromodomain; Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
      cd15541
      Location:423468
      PHD_TIF1_like; PHD finger found in the transcriptional intermediary factor 1 (TIF1) family and similar proteins
      pfam01342
      Location:189256
      SAND; SAND domain
      pfam03172
      Location:11106
      Sp100; Sp100 domain
      cl02536
      Location:323396
      SAND; SAND domain
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