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    Prcd photoreceptor disc component [ Mus musculus (house mouse) ]

    Gene ID: 100038570, updated on 22-Aug-2021

    Summary

    Official Symbol
    Prcdprovided by MGI
    Official Full Name
    photoreceptor disc componentprovided by MGI
    Primary source
    MGI:MGI:3649529
    See related
    Ensembl:ENSMUSG00000075410
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm11744
    Expression
    Broad expression in ovary adult (RPKM 6.5), adrenal adult (RPKM 5.2) and 18 other tissues See more
    Orthologs
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    Genomic context

    See Prcd in Genome Data Viewer
    Location:
    11 E2; 11
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (116544603..116559224)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (116653889..116668389)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (116518422..116529703)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene ubiquitin-conjugating enzyme E2O Neighboring gene arylalkylamine N-acetyltransferase Neighboring gene rhomboid 5 homolog 2 Neighboring gene cytoglobin Neighboring gene small nucleolar RNA, C/D box 1C Neighboring gene small nucleolar RNA, C/D box 1B Neighboring gene small nucleolar RNA host gene 16

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables opsin binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables opsin binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in detection of light stimulus involved in visual perception TAS
    Traceable Author Statement
    more info
    PubMed 
    acts_upstream_of_or_within response to stimulus IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within visual perception IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cell projection IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
     
    located_in extracellular region ISO
    Inferred from Sequence Orthology
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in photoreceptor outer segment IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in photoreceptor outer segment membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in photoreceptor outer segment membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in photoreceptor outer segment membrane ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in photoreceptor outer segment membrane TAS
    Traceable Author Statement
    more info
    PubMed 

    General protein information

    Preferred Names
    photoreceptor disk component PRCD
    Names
    progressive rod cone degeneration protein
    progressive rod-cone degeneration protein homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001163318.1NP_001156790.1  photoreceptor disk component PRCD precursor

      See identical proteins and their annotated locations for NP_001156790.1

      Status: VALIDATED

      Source sequence(s)
      AI846736, CK620045, DQ390337
      Consensus CDS
      CCDS48987.1
      UniProtKB/Swiss-Prot
      Q00LT2
      Related
      ENSMUSP00000112020.3, ENSMUST00000116318.3
      Conserved Domains (1) summary
      pfam15201
      Location:153
      Rod_cone_degen; Progressive rod-cone degeneration

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      116544603..116559224
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017314192.1XP_017169681.1  photoreceptor disk component PRCD isoform X1

      Conserved Domains (1) summary
      pfam15201
      Location:146
      Rod_cone_degen; Progressive rod-cone degeneration
    2. XM_017314193.1XP_017169682.1  photoreceptor disk component PRCD isoform X1

      Conserved Domains (1) summary
      pfam15201
      Location:146
      Rod_cone_degen; Progressive rod-cone degeneration
    3. XM_017314195.3XP_017169684.1  photoreceptor disk component PRCD isoform X1

      Conserved Domains (1) summary
      pfam15201
      Location:146
      Rod_cone_degen; Progressive rod-cone degeneration
    4. XM_017314196.3XP_017169685.1  photoreceptor disk component PRCD isoform X2

    5. XM_017314194.3XP_017169683.1  photoreceptor disk component PRCD isoform X1

      Conserved Domains (1) summary
      pfam15201
      Location:146
      Rod_cone_degen; Progressive rod-cone degeneration

    RNA

    1. XR_001779849.2 RNA Sequence

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