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    LOC8066584 E3 ubiquitin-protein ligase ORTHRUS 2 [ Sorghum bicolor (sorghum) ]

    Gene ID: 8066584, updated on 3-Jun-2019

    Summary

    Gene symbol
    LOC8066584
    Gene description
    E3 ubiquitin-protein ligase ORTHRUS 2
    Locus tag
    SORBI_3009G001200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sorghum bicolor
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

    Genomic context

    See LOC8066584 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 9 NC_012878.2 (141050..145641)

    Chromosome 9 - NC_012878.2Genomic Context describing neighboring genes Neighboring gene protein NEN4 Neighboring gene uncharacterized LOC8065275 Neighboring gene protein MEI2-like 3 Neighboring gene charged multivesicular body protein 5

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_012878.2 Chromosome 9 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    General protein information

    Preferred Names
    E3 ubiquitin-protein ligase ORTHRUS 2

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Genomic

    1. NC_012878.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

      Range
      141050..145641
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002439045.2XP_002439090.1  E3 ubiquitin-protein ligase ORTHRUS 2

      See identical proteins and their annotated locations for XP_002439090.1

      UniProtKB/TrEMBL
      C5YXY0
      Conserved Domains (4) summary
      cd00162
      Location:128170
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
      pfam00097
      Location:499555
      zf-C3HC4; Zinc finger, C3HC4 type (RING finger)
      pfam02182
      Location:245407
      SAD_SRA; SAD/SRA domain
      cl22851
      Location:1257
      PHD_SF; PHD finger superfamily
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