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    Snhg5 small nucleolar RNA host gene 5 [ Mus musculus (house mouse) ]

    Gene ID: 72655, updated on 25-Jan-2022


    Official Symbol
    Snhg5provided by MGI
    Official Full Name
    small nucleolar RNA host gene 5provided by MGI
    Primary source
    See related
    Ensembl:ENSMUSG00000097195 AllianceGenome:MGI:1919905
    Gene type
    RefSeq status
    Mus musculus
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    mU50HG-b; 2810026P18Rik; 4933428I09Rik
    Is expressed in brain; heart; intestine; liver; and lung. Orthologous to human SNHG5 (small nucleolar RNA host gene 5). [provided by Alliance of Genome Resources, Nov 2021]
    Broad expression in liver E14 (RPKM 43.1), CNS E11.5 (RPKM 42.6) and 20 other tissues See more
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    Genomic context

    See Snhg5 in Genome Data Viewer
    9; 9 E3.1
    Exon count:
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (88403105..88404950, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (88521052..88522897, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (88415890..88417729, complement)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene sorting nexin 14 Neighboring gene 60S ribosomal protein L21 pseudogene Neighboring gene synaptotagmin binding, cytoplasmic RNA interacting protein Neighboring gene small nucleolar RNA, C/D box 50A Neighboring gene small nucleolar RNA, C/D box 50B Neighboring gene predicted gene, 22985 Neighboring gene zinc finger protein 949

    Genomic regions, transcripts, and products


    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a


    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.


    1. NR_040721.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK012825, BC032970, CT025673

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J


    1. NC_000075.7 Reference GRCm39 C57BL/6J

      88403105..88404950 complement
      GenBank, FASTA, Sequence Viewer (Graphics)
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