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    Zglp1 zinc finger, GATA-like protein 1 [ Mus musculus (house mouse) ]

    Gene ID: 100009600, updated on 23-Jun-2021

    Summary

    Official Symbol
    Zglp1provided by MGI
    Official Full Name
    zinc finger, GATA-like protein 1provided by MGI
    Primary source
    MGI:MGI:3696042
    See related
    Ensembl:ENSMUSG00000079681
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gl; Glp1
    Expression
    Ubiquitous expression in whole brain E14.5 (RPKM 1.2), CNS E14 (RPKM 1.2) and 27 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Zglp1 in Genome Data Viewer
    Location:
    9; 9 A3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (20973689..20978389, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (21062393..21067093, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (20866837..20871537, complement)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene intercellular adhesion molecule 4, Landsteiner-Wiener blood group Neighboring gene microRNA 1900 Neighboring gene intercellular adhesion molecule 5, telencephalin Neighboring gene predicted gene, 38431 Neighboring gene ferredoxin 2 Neighboring gene ribonucleoprotein, PTB-binding 1 Neighboring gene microRNA 7082

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Potential readthrough

    Included gene: Fdx2

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    GATA-type zinc finger protein 1
    Names
    GATA-like 1
    GATA-like protein 1
    GLP-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001103168.1NP_001096638.1  GATA-type zinc finger protein 1

      See identical proteins and their annotated locations for NP_001096638.1

      Status: VALIDATED

      Source sequence(s)
      DQ286956
      Consensus CDS
      CCDS40549.1
      UniProtKB/Swiss-Prot
      Q1WG82
      Related
      ENSMUSP00000111157.3, ENSMUST00000115494.3
      Conserved Domains (2) summary
      smart00401
      Location:194231
      ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
      pfam00320
      Location:197231
      GATA; GATA zinc finger

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      20973689..20978389 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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