Format

Send to:

Choose Destination
    • Showing Current items.

    Zxdc ZXD family zinc finger C [ Mus musculus (house mouse) ]

    Gene ID: 80292, updated on 23-Jun-2021

    Summary

    Official Symbol
    Zxdcprovided by MGI
    Official Full Name
    ZXD family zinc finger Cprovided by MGI
    Primary source
    MGI:MGI:1933108
    See related
    Ensembl:ENSMUSG00000034430
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    BC003332; A930012H20; B930086F11Rik
    Expression
    Ubiquitous expression in ovary adult (RPKM 12.4), adrenal adult (RPKM 10.2) and 28 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Zxdc in Genome Data Viewer
    Location:
    6 D1; 6
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (90346460..90380472)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (90369478..90403490)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (90319488..90353480)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene carbohydrate sulfotransferase 13 Neighboring gene urocanase domain containing 1 Neighboring gene cilia and flagella associated protein 100 Neighboring gene predicted gene, 53295 Neighboring gene Kruppel-like factor 15

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Homology

    Clone Names

    • MGC7160

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables C2H2 zinc finger domain binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables LRR domain binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables transcription coactivator activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables transcription coregulator activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription, DNA-templated ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_030260.3NP_084536.2  zinc finger protein ZXDC isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript but encodes the shorter protein (isoform 1).
      Source sequence(s)
      AC163346, AK042190, AK044429, AK081005
      Consensus CDS
      CCDS51848.1
      UniProtKB/Swiss-Prot
      Q8C8V1
      Related
      ENSMUSP00000109167.3, ENSMUST00000113539.8
      Conserved Domains (4) summary
      COG5048
      Location:392691
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:334353
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:226252
      zf-H2C2_2; Zinc-finger double domain
      pfam17017
      Location:209354
      zf-C2H2_aberr; Aberrant zinc-finger
    2. NM_173002.3NP_766590.1  zinc finger protein ZXDC isoform 2

      See identical proteins and their annotated locations for NP_766590.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) has additional exons in the 3' coding region and UTR. The resulting protein (isoform 2) is longer and has a distinct C-terminus compared to isoform 1.
      Source sequence(s)
      AK044429, AK044529, AK081005
      Consensus CDS
      CCDS20358.1
      UniProtKB/Swiss-Prot
      Q8C8V1
      Related
      ENSMUSP00000074619.4, ENSMUST00000075117.10
      Conserved Domains (4) summary
      COG5048
      Location:392691
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:334353
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:226252
      zf-H2C2_2; Zinc-finger double domain
      pfam17017
      Location:209354
      zf-C2H2_aberr; Aberrant zinc-finger

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      90346460..90380472
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_377502.4 RNA Sequence

    Support Center