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    Rdh16 retinol dehydrogenase 16 [ Mus musculus (house mouse) ]

    Gene ID: 19683, updated on 23-Jun-2021

    Summary

    Official Symbol
    Rdh16provided by MGI
    Official Full Name
    retinol dehydrogenase 16provided by MGI
    Primary source
    MGI:MGI:1201375
    See related
    Ensembl:ENSMUSG00000069456
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    CRA; Rdh; CRAD; Rdh6; CRAD1
    Expression
    Biased expression in kidney adult (RPKM 24.2), liver adult (RPKM 21.9) and 4 other tissues See more
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    Genomic context

    See Rdh16 in Genome Data Viewer
    Location:
    10; 10 D3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (127636959..127651715)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (127801090..127815846)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (127238209..127252895)

    Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene retinol dehydrogenase 1 (all trans) Neighboring gene retinol dehydrogenase 9 Neighboring gene retinol dehydrogenase 18, pseudogene Neighboring gene retinol dehydrogenase 19

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    General gene information

    Markers

    Homology

    Clone Names

    • MGC107668

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables NAD-retinol dehydrogenase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables androstan-3-alpha,17-beta-diol dehydrogenase activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables androsterone dehydrogenase activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables identical protein binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables identical protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
     
    located_in endoplasmic reticulum lumen IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in endoplasmic reticulum membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in endoplasmic reticulum membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in integral component of organelle membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in integral component of organelle membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in intracellular membrane-bounded organelle ISO
    Inferred from Sequence Orthology
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    retinol dehydrogenase 16
    Names
    cis-retinol/androgen dehydrogenase 1
    retinol dehydrogenase 6
    retinol dehydrogenase type 6
    NP_033066.1
    XP_006513452.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_009040.3NP_033066.1  retinol dehydrogenase 16

      See identical proteins and their annotated locations for NP_033066.1

      Status: VALIDATED

      Source sequence(s)
      AC131690, AF030513, AK149404, BY144003
      Consensus CDS
      CCDS24252.1
      UniProtKB/TrEMBL
      O54909
      Related
      ENSMUSP00000071573.2, ENSMUST00000071646.2
      Conserved Domains (1) summary
      cd09805
      Location:30306
      type2_17beta_HSD-like_SDR_c; human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000076.7 Reference GRCm39 C57BL/6J

      Range
      127636959..127651715
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006513389.3XP_006513452.1  retinol dehydrogenase 16 isoform X1

      See identical proteins and their annotated locations for XP_006513452.1

      UniProtKB/TrEMBL
      O54909
      Conserved Domains (1) summary
      cd09805
      Location:30306
      type2_17beta_HSD-like_SDR_c; human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs
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