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    Pnisr PNN interacting serine/arginine-rich [ Mus musculus (house mouse) ]

    Gene ID: 66625, updated on 23-Jun-2021

    Summary

    Official Symbol
    Pnisrprovided by MGI
    Official Full Name
    PNN interacting serine/arginine-richprovided by MGI
    Primary source
    MGI:MGI:1913875
    See related
    Ensembl:ENSMUSG00000028248
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Sfr; Pinsr; Sfrs18; Srsf18; AA673174; 5730406M06Rik
    Expression
    Broad expression in CNS E11.5 (RPKM 36.1), CNS E14 (RPKM 33.4) and 24 other tissues See more
    Orthologs
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    Genomic context

    See Pnisr in Genome Data Viewer
    Location:
    4; 4 A3
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (21846621..21876475)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (21846657..21876475)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (21774730..21803622)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene cyclin C Neighboring gene thiosulfate sulfurtransferase (rhodanese)-like domain containing 3 Neighboring gene ubiquitin specific petidase 45 Neighboring gene RIKEN cDNA 4930528A17 gene Neighboring gene coenzyme Q3 methyltransferase Neighboring gene failed axon connections homolog

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nuclear speck IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nuclear speck ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in presynaptic active zone IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    arginine/serine-rich protein PNISR
    Names
    SRrp130
    serine/arginine-rich splicing factor 18
    serine/arginine-rich-splicing regulatory protein 130
    splicing factor, arginine/serine-rich 130
    splicing factor, arginine/serine-rich 18

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001369189.1NP_001356118.1  arginine/serine-rich protein PNISR isoform 2

      Status: VALIDATED

      Source sequence(s)
      AL772187
      Consensus CDS
      CCDS89720.1
      Related
      ENSMUSP00000095840.3, ENSMUST00000098238.9
      Conserved Domains (2) summary
      TIGR01642
      Location:643750
      U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
      pfam15996
      Location:223380
      PNISR; Arginine/serine-rich protein PNISR
    2. NM_001369190.1NP_001356119.1  arginine/serine-rich protein PNISR isoform 3

      Status: VALIDATED

      Source sequence(s)
      AL772187
      Conserved Domains (2) summary
      TIGR01642
      Location:401508
      U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
      pfam15996
      Location:1138
      PNISR; Arginine/serine-rich protein PNISR
    3. NM_001369191.1NP_001356120.1  arginine/serine-rich protein PNISR isoform 4

      Status: VALIDATED

      Source sequence(s)
      AL772187
      Conserved Domains (2) summary
      TIGR01642
      Location:401508
      U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
      pfam15996
      Location:1138
      PNISR; Arginine/serine-rich protein PNISR
    4. NM_025669.2NP_079945.1  arginine/serine-rich protein PNISR isoform 1

      See identical proteins and their annotated locations for NP_079945.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longest isoform (1).
      Source sequence(s)
      AL772187
      Consensus CDS
      CCDS51129.1
      UniProtKB/TrEMBL
      A2AJT5
      Related
      ENSMUSP00000029911.6, ENSMUST00000029911.12
      Conserved Domains (2) summary
      TIGR01642
      Location:643750
      U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
      pfam15996
      Location:223380
      PNISR; Arginine/serine-rich protein PNISR

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      21846621..21876475
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017320353.3XP_017175842.1  arginine/serine-rich protein PNISR isoform X3

    2. XM_030253702.2XP_030109562.1  arginine/serine-rich protein PNISR isoform X2

      Conserved Domains (2) summary
      TIGR01642
      Location:548655
      U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
      pfam15996
      Location:128285
      PNISR; Arginine/serine-rich protein PNISR
    3. XM_006538184.5XP_006538247.1  arginine/serine-rich protein PNISR isoform X1

      See identical proteins and their annotated locations for XP_006538247.1

      UniProtKB/TrEMBL
      A2AJT5
      Conserved Domains (2) summary
      TIGR01642
      Location:643750
      U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
      pfam15996
      Location:223380
      PNISR; Arginine/serine-rich protein PNISR
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