Format

Send to:

Choose Destination
    • Showing Current items.

    Cidec cell death-inducing DFFA-like effector c [ Mus musculus (house mouse) ]

    Gene ID: 14311, updated on 29-Jun-2021

    Summary

    Official Symbol
    Cidecprovided by MGI
    Official Full Name
    cell death-inducing DFFA-like effector cprovided by MGI
    Primary source
    MGI:MGI:95585
    See related
    Ensembl:ENSMUSG00000030278
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Fsp; CIDE-; Fsp27; CIDE-3
    Expression
    Biased expression in subcutaneous fat pad adult (RPKM 1173.4), genital fat pad adult (RPKM 661.3) and 5 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Cidec in Genome Data Viewer
    Location:
    6; 6 E3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (113401595..113412721, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (113424634..113435760, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (113374630..113385749, complement)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene actin related protein 2/3 complex, subunit 4 Neighboring gene tubulin tyrosine ligase-like family, member 3 Neighboring gene RNA pseudouridylate synthase domain containing 3 Neighboring gene predicted gene, 52871 Neighboring gene jagunal homolog 1 Neighboring gene interleukin 17 receptor E Neighboring gene predicted gene, 52872

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    acts_upstream_of_or_within apoptotic process ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    involved_in execution phase of apoptosis ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in lipid droplet organization ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of apoptotic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    located_in cytosol TAS
    Traceable Author Statement
    more info
     
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
     
    located_in lipid droplet IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    cell death activator CIDE-3
    Names
    CIDE-3alpha
    cell death-inducing DFFA-like effector protein C
    fat specific gene 27
    fat-specific protein FSP27

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001301295.1NP_001288224.1  cell death activator CIDE-3 isoform 1

      See identical proteins and their annotated locations for NP_001288224.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR. Variants 1 and 2 encode the same protein.
      Source sequence(s)
      AC153910
      Consensus CDS
      CCDS20418.1
      UniProtKB/Swiss-Prot
      P56198
      Related
      ENSMUSP00000108712.2, ENSMUST00000113089.8
      Conserved Domains (1) summary
      cl02541
      Location:41120
      CIDE_N; CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with ...
    2. NM_001372264.1NP_001359193.1  cell death activator CIDE-3 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC153910
      Consensus CDS
      CCDS90100.1
      Related
      ENSMUSP00000108714.2, ENSMUST00000113091.8
      Conserved Domains (1) summary
      cl02541
      Location:51130
      CIDE_N; CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with ...
    3. NM_178373.4NP_848460.1  cell death activator CIDE-3 isoform 1

      See identical proteins and their annotated locations for NP_848460.1

      Status: VALIDATED

      Source sequence(s)
      AC153910, AK080133
      Consensus CDS
      CCDS20418.1
      UniProtKB/Swiss-Prot
      P56198
      Related
      ENSMUSP00000032416.5, ENSMUST00000032416.11
      Conserved Domains (1) summary
      cl02541
      Location:41120
      CIDE_N; CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with ...

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      113401595..113412721 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Support Center