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    Slc33a1 solute carrier family 33 (acetyl-CoA transporter), member 1 [ Mus musculus (house mouse) ]

    Gene ID: 11416, updated on 23-Jun-2021

    Summary

    Official Symbol
    Slc33a1provided by MGI
    Official Full Name
    solute carrier family 33 (acetyl-CoA transporter), member 1provided by MGI
    Primary source
    MGI:MGI:1332247
    See related
    Ensembl:ENSMUSG00000027822
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ac; Acatn; AI315656; AI788741; D630022N01Rik
    Expression
    Ubiquitous expression in kidney adult (RPKM 15.9), adrenal adult (RPKM 12.8) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Slc33a1 in Genome Data Viewer
    Location:
    3; 3 E1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (63849744..63872154, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (63942323..63964733, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (63746258..63768655, complement)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA E130311K13 gene Neighboring gene predicted gene, 34379 Neighboring gene guanine monophosphate synthetase Neighboring gene vomeronasal 2, receptor, pseudogene 3 Neighboring gene vomeronasal 2, receptor 1 Neighboring gene predicted gene, 22165

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables acetyl-CoA transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables solute:proton symporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in BMP signaling pathway ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in SMAD protein signal transduction ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
     
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    acetyl-coenzyme A transporter 1
    Names
    AT-1
    acetyl-CoA transporter 1
    solute carrier family 33 member 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001272035.1NP_001258964.1  acetyl-coenzyme A transporter 1 isoform 1

      See identical proteins and their annotated locations for NP_001258964.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 3' UTR compared to variant 1. Both variants 1 and 2 encode the same isoform (1).
      Source sequence(s)
      AC116732, AW519598
      Consensus CDS
      CCDS17382.1
      UniProtKB/Swiss-Prot
      Q99J27
      Related
      ENSMUSP00000125713.2, ENSMUST00000160883.2
      Conserved Domains (1) summary
      TIGR00901
      Location:86459
      2A0125; AmpG-like permease
    2. NM_001331067.1NP_001317996.1  acetyl-coenzyme A transporter 1 isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) differs in the 5' UTR, lacks a portion of the 5' coding region, and uses an alternate translation start site compared to variant 1. The encoded isoform (2) has a shorter and distinct N-terminus compared to isoform 1.
      Source sequence(s)
      AC116732
    3. NM_015728.5NP_056543.2  acetyl-coenzyme A transporter 1 isoform 1

      See identical proteins and their annotated locations for NP_056543.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same isoform (1).
      Source sequence(s)
      AC116732, AW519598
      Consensus CDS
      CCDS17382.1
      UniProtKB/Swiss-Prot
      Q99J27
      Related
      ENSMUSP00000029402.9, ENSMUST00000029402.15
      Conserved Domains (1) summary
      TIGR00901
      Location:86459
      2A0125; AmpG-like permease

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      63849744..63872154 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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