Format

Send to:

Choose Destination
    • Showing Current items.

    Niban3 niban apoptosis regulator 3 [ Mus musculus (house mouse) ]

    Gene ID: 100037278, updated on 23-Jun-2021

    Summary

    Official Symbol
    Niban3provided by MGI
    Official Full Name
    niban apoptosis regulator 3provided by MGI
    Primary source
    MGI:MGI:3686743
    See related
    Ensembl:ENSMUSG00000043243
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Bcn; Bcnp1; Fam129; Fam129c
    Expression
    Biased expression in spleen adult (RPKM 24.5), thymus adult (RPKM 3.3) and 3 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Niban3 in Genome Data Viewer
    Location:
    8; 8 B3.3
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (72049000..72061599)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (71596356..71608146)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NC_000074.5 (74121545..74132048)

    Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene solute carrier family 27 (fatty acid transporter), member 1 Neighboring gene 6-phosphogluconolactonase Neighboring gene collagen beta(1-O)galactosyltransferase 1 Neighboring gene unc-13 homolog A Neighboring gene predicted gene, 39195 Neighboring gene microRNA 6769b

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1)  1 citation
    • Endonuclease-mediated (1) 

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    protein Niban 3
    Names
    BCNP1 homolog
    family with sequence similarity 129, member C

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001166213.2NP_001159685.1  protein Niban 3 isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 3' coding region, compared to variant 1. This results in a shorter protein (isoform 2), compared to isoform 1.
      Source sequence(s)
      AC162033
      Consensus CDS
      CCDS52587.1
      UniProtKB/TrEMBL
      D3YZB0
      Related
      ENSMUSP00000123432.2, ENSMUST00000143662.8
    2. NM_001384129.1NP_001371058.1  protein Niban 3 isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform.
      Source sequence(s)
      AC162033

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000074.7 Reference GRCm39 C57BL/6J

      Range
      72049000..72061599
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006509530.4XP_006509593.1  protein Niban 3 isoform X1

    2. XM_036153693.1XP_036009586.1  protein Niban 3 isoform X2

    RNA

    1. XR_004934733.1 RNA Sequence

    2. XR_379027.4 RNA Sequence

    3. XR_003947209.2 RNA Sequence

    4. XR_379028.4 RNA Sequence

    5. XR_004934734.1 RNA Sequence

    6. XR_004934735.1 RNA Sequence

    7. XR_004934727.1 RNA Sequence

    8. XR_004934728.1 RNA Sequence

    9. XR_004934730.1 RNA Sequence

    10. XR_004934731.1 RNA Sequence

    11. XR_004934732.1 RNA Sequence

    12. XR_004934729.1 RNA Sequence

    Support Center