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    Umad1 UMAP1-MVP12 associated (UMA) domain containing 1 [ Mus musculus (house mouse) ]

    Gene ID: 100036521, updated on 23-Jun-2021

    Summary

    Official Symbol
    Umad1provided by MGI
    Official Full Name
    UMAP1-MVP12 associated (UMA) domain containing 1provided by MGI
    Primary source
    MGI:MGI:3840148
    See related
    Ensembl:ENSMUSG00000089862
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm16039
    Expression
    Ubiquitous expression in CNS E18 (RPKM 8.0), kidney adult (RPKM 6.9) and 28 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Umad1 in Genome Data Viewer
    Location:
    6; 6 A1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (8259288..8428767)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (8259288..8428767)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (8209288..8378767)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene meiosis regulator for oocyte development Neighboring gene replication protein A3 Neighboring gene predicted gene, 46952 Neighboring gene lysyl-tRNA synthetase pseudogene Neighboring gene RIKEN cDNA A430035B10 gene Neighboring gene predicted gene, 26075

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Potential readthrough

    Included gene: Glcci1

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    UBAP1-MVB12-associated (UMA)-domain containing protein 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001302353.1NP_001289282.1  UBAP1-MVB12-associated (UMA)-domain containing protein 1 isoform 1

      See identical proteins and their annotated locations for NP_001289282.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AK009885, BQ176979, BQ829587, BY291850, CF165156
      Consensus CDS
      CCDS80487.1
      UniProtKB/TrEMBL
      E0CX23
      Related
      ENSMUSP00000124993.2, ENSMUST00000160705.8
      Conserved Domains (1) summary
      pfam07718
      Location:92118
      Coatamer_beta_C; Coatomer beta C-terminal region
    2. NM_001302354.1NP_001289283.1  UBAP1-MVB12-associated (UMA)-domain containing protein 1 isoform 2

      See identical proteins and their annotated locations for NP_001289283.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an alternate in-frame exon, compared to variant 1. The encoded isoform (2) is shorter than isoform 1.
      Source sequence(s)
      AK009885, BQ176979, BY291850, CF165156
      Consensus CDS
      CCDS80488.1
      UniProtKB/TrEMBL
      E0CXP6
      Related
      ENSMUSP00000124564.2, ENSMUST00000159433.8
      Conserved Domains (1) summary
      pfam07718
      Location:6692
      Coatamer_beta_C; Coatomer beta C-terminal region

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      8259288..8428767
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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