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    A930017K11Rik RIKEN cDNA A930017K11 gene [ Mus musculus (house mouse) ]

    Gene ID: 100034748, updated on 23-Jun-2021

    Summary

    Official Symbol
    A930017K11Rikprovided by MGI
    Official Full Name
    RIKEN cDNA A930017K11 geneprovided by MGI
    Primary source
    MGI:MGI:2442713
    See related
    Ensembl:ENSMUSG00000025727
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    A93001711Rik
    Expression
    Biased expression in cerebellum adult (RPKM 3.8), kidney adult (RPKM 3.2) and 6 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See A930017K11Rik in Genome Data Viewer
    Location:
    17; 17 A3.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (26165353..26171539, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (25946379..25952573, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 17 NC_000083.5 (26083328..26089510, complement)

    Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene Rab40C, member RAS oncogene family Neighboring gene cytochrome c oxidase subunit 7C, pseudogene 1 Neighboring gene phosphatidylinositol glycan anchor biosynthesis, class Q Neighboring gene RIKEN cDNA gene D630044L22 gene Neighboring gene NHL repeat containing 4 Neighboring gene calpain 15 Neighboring gene RIKEN cDNA 1700022N22 gene Neighboring gene RAB11 family interacting protein 3 (class II)

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001358019.1NP_001344948.1  proline-rich protein 35

      Status: VALIDATED

      Source sequence(s)
      AK044505, AW124301
      Consensus CDS
      CCDS89026.1
      Related
      ENSMUSP00000125106.2, ENSMUST00000162431.2
      Conserved Domains (2) summary
      PHA03247
      Location:94539
      PHA03247; large tegument protein UL36; Provisional
      pfam15269
      Location:1770
      zf-C2H2_7; Zinc-finger

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000083.7 Reference GRCm39 C57BL/6J

      Range
      26165353..26171539 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030249393.2XP_030105253.1  proline-rich protein 35 isoform X1

      Conserved Domains (2) summary
      PHA03247
      Location:94539
      PHA03247; large tegument protein UL36; Provisional
      pfam15269
      Location:1770
      zf-C2H2_7; Zinc-finger
    2. XM_030249394.2XP_030105254.1  proline-rich protein 35 isoform X1

      Conserved Domains (2) summary
      PHA03247
      Location:94539
      PHA03247; large tegument protein UL36; Provisional
      pfam15269
      Location:1770
      zf-C2H2_7; Zinc-finger
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