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Zxdc ZXD family zinc finger C [ Mus musculus (house mouse) ]

Gene ID: 80292, updated on 23-Jun-2021

Summary

Official Symbol
Zxdcprovided by MGI
Official Full Name
ZXD family zinc finger Cprovided by MGI
Primary source
MGI:MGI:1933108
See related
Ensembl:ENSMUSG00000034430
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
BC003332; A930012H20; B930086F11Rik
Expression
Ubiquitous expression in ovary adult (RPKM 12.4), adrenal adult (RPKM 10.2) and 28 other tissues See more
Orthologs
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Genomic context

See Zxdc in Genome Data Viewer
Location:
6 D1; 6
Exon count:
10
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (90346460..90380472)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (90369478..90403490)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (90319488..90353480)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene carbohydrate sulfotransferase 13 Neighboring gene urocanase domain containing 1 Neighboring gene cilia and flagella associated protein 100 Neighboring gene predicted gene, 53295 Neighboring gene Kruppel-like factor 15

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Homology

Clone Names

  • MGC7160

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables C2H2 zinc finger domain binding ISO
Inferred from Sequence Orthology
more info
 
enables LRR domain binding ISO
Inferred from Sequence Orthology
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables transcription coactivator activity ISO
Inferred from Sequence Orthology
more info
 
enables transcription coregulator activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription, DNA-templated ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_030260.3NP_084536.2  zinc finger protein ZXDC isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript but encodes the shorter protein (isoform 1).
    Source sequence(s)
    AC163346, AK042190, AK044429, AK081005
    Consensus CDS
    CCDS51848.1
    UniProtKB/Swiss-Prot
    Q8C8V1
    Related
    ENSMUSP00000109167.3, ENSMUST00000113539.8
    Conserved Domains (4) summary
    COG5048
    Location:392691
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:334353
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:226252
    zf-H2C2_2; Zinc-finger double domain
    pfam17017
    Location:209354
    zf-C2H2_aberr; Aberrant zinc-finger
  2. NM_173002.3NP_766590.1  zinc finger protein ZXDC isoform 2

    See identical proteins and their annotated locations for NP_766590.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) has additional exons in the 3' coding region and UTR. The resulting protein (isoform 2) is longer and has a distinct C-terminus compared to isoform 1.
    Source sequence(s)
    AK044429, AK044529, AK081005
    Consensus CDS
    CCDS20358.1
    UniProtKB/Swiss-Prot
    Q8C8V1
    Related
    ENSMUSP00000074619.4, ENSMUST00000075117.10
    Conserved Domains (4) summary
    COG5048
    Location:392691
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:334353
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:226252
    zf-H2C2_2; Zinc-finger double domain
    pfam17017
    Location:209354
    zf-C2H2_aberr; Aberrant zinc-finger

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    90346460..90380472
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_377502.4 RNA Sequence

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