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Plbd2 phospholipase B domain containing 2 [ Mus musculus (house mouse) ]

Gene ID: 71772, updated on 23-Jun-2021

Summary

Official Symbol
Plbd2provided by MGI
Official Full Name
phospholipase B domain containing 2provided by MGI
Primary source
MGI:MGI:1919022
See related
Ensembl:ENSMUSG00000029598
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
p7; P76; AU019810; 1300012G16Rik
Expression
Ubiquitous expression in adrenal adult (RPKM 51.3), testis adult (RPKM 42.1) and 28 other tissues See more
Orthologs
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Genomic context

See Plbd2 in Genome Data Viewer
Location:
5; 5 F
Exon count:
12
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (120621958..120641688, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (120483893..120503623, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (120933902..120953632, complement)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene LIM homeobox protein 5 Neighboring gene serine dehydratase-like Neighboring gene serine dehydratase Neighboring gene solute carrier family 8 (sodium/lithium/calcium exchanger), member B1 Neighboring gene two pore channel 1 Neighboring gene IQ motif containing D

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Gene trapped (1) 
  • Endonuclease-mediated (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
 
enables phospholipase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within lipid catabolic process IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 
involved_in phospholipid catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in extracellular region IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in lysosome IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
putative phospholipase B-like 2
Names
66.3 kDa protein
76 kDa protein
LAMA-like protein 2
lamina ancestor homolog 2
phospholipase B domain-containing protein 2
NP_076114.2
XP_030110675.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_023625.4NP_076114.2  putative phospholipase B-like 2 precursor

    See identical proteins and their annotated locations for NP_076114.2

    Status: VALIDATED

    Source sequence(s)
    AK029813, AK042089, AK043608
    Consensus CDS
    CCDS19620.1
    UniProtKB/Swiss-Prot
    Q3TCN2
    Related
    ENSMUSP00000031597.7, ENSMUST00000031597.7
    Conserved Domains (1) summary
    pfam04916
    Location:86589
    Phospholip_B; Phospholipase B

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    120621958..120641688 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030254815.2XP_030110675.1  putative phospholipase B-like 2 isoform X1

    Conserved Domains (1) summary
    pfam04916
    Location:1315
    Phospholip_B; Phospholipase B
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