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Saal1 serum amyloid A-like 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 687992, updated on 5-Jun-2021

Summary

Official Symbol
Saal1provided by RGD
Official Full Name
serum amyloid A-like 1provided by RGD
Primary source
RGD:1594860
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Kidney (RPKM 21.2), Muscle (RPKM 6.3) and 5 other tissues See more
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Genomic context

See Saal1 in Genome Data Viewer
Location:
1q22
Exon count:
4
Annotation release Status Assembly Chr Location
108 current mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (97218706..97222287, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (102738691..102743571, complement)

Chromosome 1 - NC_051336.1Genomic Context describing neighboring genes Neighboring gene tryptophan hydroxylase 1 Neighboring gene similar to Serum amyloid A-3 protein precursor Neighboring gene uncharacterized LOC120099810 Neighboring gene serum amyloid A4

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
acts_upstream_of_or_within positive regulation of synoviocyte proliferation ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRatBN7.2 Primary Assembly

Genomic

  1. NC_051336.1 Reference mRatBN7.2 Primary Assembly

    Range
    97218706..97222287 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039100970.1XP_038956898.1  serum amyloid A-3 protein isoform X2

    Conserved Domains (1) summary
    pfam00277
    Location:82181
    SAA; Serum amyloid A protein
  2. XM_003748860.5XP_003748908.2  serum amyloid A-3 protein isoform X1

    See identical proteins and their annotated locations for XP_003748908.2

    Conserved Domains (1) summary
    pfam00277
    Location:83182
    SAA; Serum amyloid A protein
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