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Naif1 nuclear apoptosis inducing factor 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 687739, updated on 30-Sep-2021

Summary

Official Symbol
Naif1provided by RGD
Official Full Name
nuclear apoptosis inducing factor 1provided by RGD
Primary source
RGD:1597546
See related
EnsemblRapid:ENSRNOG00000050204
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Thymus (RPKM 21.5), Spleen (RPKM 21.5) and 9 other tissues See more
Orthologs
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Genomic context

See Naif1 in Genome Data Viewer
Location:
3p11
Exon count:
2
Annotation release Status Assembly Chr Location
108 current mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (15742337..15747672)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (11476330..11482629)

Chromosome 3 - NC_051338.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120101523 Neighboring gene prostaglandin E synthase 2 Neighboring gene solute carrier family 25 member 25 Neighboring gene mitochondrial import inner membrane translocase subunit Tim17-B-like Neighboring gene family with sequence similarity 102, member A

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
nuclear apoptosis-inducing factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRatBN7.2 Primary Assembly

Genomic

  1. NC_051338.1 Reference mRatBN7.2 Primary Assembly

    Range
    15742337..15747672
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003749447.5XP_003749495.1  nuclear apoptosis-inducing factor 1

    See identical proteins and their annotated locations for XP_003749495.1

    UniProtKB/TrEMBL
    M0R6C4
    Related
    ENSRNOP00000064971.1, ENSRNOT00000072241.3
    Conserved Domains (1) summary
    pfam13873
    Location:885
    Myb_DNA-bind_5; Myb/SANT-like DNA-binding domain
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