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mtmr7a myotubularin related protein 7a [ Danio rerio (zebrafish) ]

Gene ID: 678558, updated on 16-Oct-2021

Summary

Official Symbol
mtmr7aprovided by ZNC
Official Full Name
myotubularin related protein 7aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-060421-7754
See related
Ensembl:ENSDARG00000037101
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
mtmr7; zgc:136753
Orthologs
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Genomic context

See mtmr7a in Genome Data Viewer
Location:
chromosome: 14
Exon count:
14
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (30398618..30412141)
105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (30058304..30071827)
103 previous assembly Zv9 (GCF_000002035.4) 14 NC_007125.5 (31268247..31281770)

Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene platelet-derived growth factor receptor-like Neighboring gene solute carrier family 7 member 2 Neighboring gene CCR4-NOT transcription complex, subunit 7 Neighboring gene zinc finger DHHC-type palmitoyltransferase 2

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Homology

Clone Names

  • MGC136753

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables phosphatase activity IEA
Inferred from Electronic Annotation
more info
 
enables phosphatidylinositol phosphate phosphatase activity IEA
Inferred from Electronic Annotation
more info
 
enables phosphatidylinositol-3-phosphatase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables phosphatidylinositol-3-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 
enables protein tyrosine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within dephosphorylation IEA
Inferred from Electronic Annotation
more info
 
involved_in phosphatidylinositol dephosphorylation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within phosphatidylinositol dephosphorylation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
is_active_in membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
myotubularin-related protein 7a
Names
myotubularin related protein 7
NP_001035406.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001040316.2NP_001035406.1  myotubularin-related protein 7a

    See identical proteins and their annotated locations for NP_001035406.1

    Status: PROVISIONAL

    Source sequence(s)
    BC115252
    UniProtKB/TrEMBL
    Q1RLW5
    Related
    ENSDARP00000053924.5, ENSDART00000053925.6
    Conserved Domains (2) summary
    cd13344
    Location:1103
    PH-GRAM_MTMR7; Myotubularian (MTM) related 7 protein (MTMR7) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain
    pfam06602
    Location:109446
    Myotub-related; Myotubularin-like phosphatase domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007125.7 Reference GRCz11 Primary Assembly

    Range
    30398618..30412141
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394914.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    327036..342204
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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