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Snhg16 small nucleolar RNA host gene 16 [ Mus musculus (house mouse) ]

Gene ID: 66293, updated on 26-Sep-2021

Summary

Official Symbol
Snhg16provided by MGI
Official Full Name
small nucleolar RNA host gene 16provided by MGI
Primary source
MGI:MGI:1913543
See related
Ensembl:ENSMUSG00000020812
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1810032O08Rik
Expression
Ubiquitous expression in limb E14.5 (RPKM 8.6), CNS E11.5 (RPKM 7.0) and 28 other tissues See more
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Genomic context

See Snhg16 in Genome Data Viewer
Location:
11; 11 E2
Exon count:
5
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (116562486..116566624)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (116671660..116675798)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (116532974..116537112)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene arylalkylamine N-acetyltransferase Neighboring gene rhomboid 5 homolog 2 Neighboring gene cytoglobin Neighboring gene photoreceptor disc component Neighboring gene ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 Neighboring gene small nucleolar RNA, C/D box 1C Neighboring gene small nucleolar RNA, C/D box 1B Neighboring gene small nucleolar RNA, C/D box 1A Neighboring gene predicted gene 11735

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027819.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the most predominant transcript.
    Source sequence(s)
    AK007675, BC055707
    Related
    ENSMUST00000139934.8
  2. NR_027820.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) is missing an internal exon at the 5' end compared to variant 1.
    Source sequence(s)
    AK007675, AK013681, BC055707
    Related
    ENSMUST00000142834.8
  3. NR_027821.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) contains an additional segment at the 3' end compared to variant 1.
    Source sequence(s)
    AK007675, BC055707
    Related
    ENSMUST00000106378.8

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    116562486..116566624
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_025472.2: Suppressed sequence

    Description
    NM_025472.2: This RefSeq was permanently suppressed because currently there is support for the transcript but not the protein.
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