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PRPF19 pre-mRNA processing factor 19 [ Canis lupus familiaris (dog) ]

Gene ID: 611552, updated on 28-Sep-2021

Summary

Official Symbol
PRPF19provided by VGNC
Official Full Name
pre-mRNA processing factor 19provided by VGNC
Primary source
VGNC:VGNC:45019
See related
EnsemblRapid:ENSCAFG00845018058
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
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Genomic context

See PRPF19 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
17
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 18 NC_051822.1 (56438338..56448620)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 18 NC_006600.4 (53963071..53973417)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 18 NC_049239.1 (55998460..56008827)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 18 NC_049278.1 (55495828..55506178)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 18 NC_049759.1 (55117335..55127674)
105 previous assembly CanFam3.1 (GCF_000002285.3) 18 NC_006600.3 (55389902..55400241)

Chromosome 18 - NC_051822.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 15 member 3 Neighboring gene transmembrane protein 132A Neighboring gene transmembrane protein 109 Neighboring gene zona pellucida glycoprotein 1 Neighboring gene uncharacterized LOC119864287

Genomic regions, transcripts, and products

General gene information

Homology

General protein information

Preferred Names
pre-mRNA-processing factor 19
Names
PRP19/PSO4 pre-mRNA processing factor 19 homolog
XP_013976791.1
XP_038281402.1
XP_038281403.1
XP_038357628.1
XP_038357629.1
XP_038420361.1
XP_038420362.1
XP_038484486.1
XP_038484487.1
XP_853782.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051822.1 Reference ROS_Cfam_1.0

    Range
    56438338..56448620
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038425475.1XP_038281403.1  pre-mRNA-processing factor 19 isoform X2

    Related
    ENSCAFP00845024983.1, ENSCAFT00845031948.1
    Conserved Domains (4) summary
    cd00200
    Location:223503
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:224262
    7WD40; WD40 repeat [structural motif]
    cd16656
    Location:456
    RING-Ubox_PRP19; U-box domain, a modified RING finger, found in pre-mRNA-processing factor 19 (Prp19) and similar proteins
    pfam08606
    Location:69133
    Prp19; Prp19/Pso4-like
  2. XM_038425474.1XP_038281402.1  pre-mRNA-processing factor 19 isoform X1

    Related
    ENSCAFP00845025053.1, ENSCAFT00845032040.1
    Conserved Domains (4) summary
    cd00200
    Location:241521
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:242280
    7WD40; WD40 repeat [structural motif]
    cd16656
    Location:2574
    RING-Ubox_PRP19; U-box domain, a modified RING finger, found in pre-mRNA-processing factor 19 (Prp19) and similar proteins
    pfam08606
    Location:87151
    Prp19; Prp19/Pso4-like

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049278.1 Alternate UMICH_Zoey_3.1

    Range
    55495828..55506178
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038501701.1XP_038357629.1  pre-mRNA-processing factor 19 isoform X2

    Conserved Domains (4) summary
    cd00200
    Location:223503
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:224262
    7WD40; WD40 repeat [structural motif]
    cd16656
    Location:456
    RING-Ubox_PRP19; U-box domain, a modified RING finger, found in pre-mRNA-processing factor 19 (Prp19) and similar proteins
    pfam08606
    Location:69133
    Prp19; Prp19/Pso4-like
  2. XM_038501700.1XP_038357628.1  pre-mRNA-processing factor 19 isoform X1

    Conserved Domains (4) summary
    cd00200
    Location:241521
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:242280
    7WD40; WD40 repeat [structural motif]
    cd16656
    Location:2574
    RING-Ubox_PRP19; U-box domain, a modified RING finger, found in pre-mRNA-processing factor 19 (Prp19) and similar proteins
    pfam08606
    Location:87151
    Prp19; Prp19/Pso4-like

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049759.1 Alternate UNSW_CanFamBas_1.0

    Range
    55117335..55127674
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038628559.1XP_038484487.1  pre-mRNA-processing factor 19 isoform X2

    Conserved Domains (4) summary
    cd00200
    Location:223503
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:224262
    7WD40; WD40 repeat [structural motif]
    cd16656
    Location:456
    RING-Ubox_PRP19; U-box domain, a modified RING finger, found in pre-mRNA-processing factor 19 (Prp19) and similar proteins
    pfam08606
    Location:69133
    Prp19; Prp19/Pso4-like
  2. XM_038628558.1XP_038484486.1  pre-mRNA-processing factor 19 isoform X1

    Conserved Domains (4) summary
    cd00200
    Location:241521
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:242280
    7WD40; WD40 repeat [structural motif]
    cd16656
    Location:2574
    RING-Ubox_PRP19; U-box domain, a modified RING finger, found in pre-mRNA-processing factor 19 (Prp19) and similar proteins
    pfam08606
    Location:87151
    Prp19; Prp19/Pso4-like

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049239.1 Alternate UU_Cfam_GSD_1.0

    Range
    55998460..56008827
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038564434.1XP_038420362.1  pre-mRNA-processing factor 19 isoform X2

    Conserved Domains (4) summary
    cd00200
    Location:223503
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:224262
    7WD40; WD40 repeat [structural motif]
    cd16656
    Location:456
    RING-Ubox_PRP19; U-box domain, a modified RING finger, found in pre-mRNA-processing factor 19 (Prp19) and similar proteins
    pfam08606
    Location:69133
    Prp19; Prp19/Pso4-like
  2. XM_038564433.1XP_038420361.1  pre-mRNA-processing factor 19 isoform X1

    Conserved Domains (4) summary
    cd00200
    Location:241521
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:242280
    7WD40; WD40 repeat [structural motif]
    cd16656
    Location:2574
    RING-Ubox_PRP19; U-box domain, a modified RING finger, found in pre-mRNA-processing factor 19 (Prp19) and similar proteins
    pfam08606
    Location:87151
    Prp19; Prp19/Pso4-like

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006600.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    53963071..53973417
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_848689.5XP_853782.1  pre-mRNA-processing factor 19 isoform X2

    See identical proteins and their annotated locations for XP_853782.1

    Conserved Domains (4) summary
    cd00200
    Location:223503
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:224262
    7WD40; WD40 repeat [structural motif]
    cd16656
    Location:456
    RING-Ubox_PRP19; U-box domain, a modified RING finger, found in pre-mRNA-processing factor 19 (Prp19) and similar proteins
    pfam08606
    Location:69133
    Prp19; Prp19/Pso4-like
  2. XM_014121316.2XP_013976791.1  pre-mRNA-processing factor 19 isoform X1

    Conserved Domains (4) summary
    cd00200
    Location:241521
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:242280
    7WD40; WD40 repeat [structural motif]
    cd16656
    Location:2574
    RING-Ubox_PRP19; U-box domain, a modified RING finger, found in pre-mRNA-processing factor 19 (Prp19) and similar proteins
    pfam08606
    Location:87151
    Prp19; Prp19/Pso4-like
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