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Trappc4 trafficking protein particle complex 4 [ Mus musculus (house mouse) ]

Gene ID: 60409, updated on 6-May-2021

Summary

Official Symbol
Trappc4provided by MGI
Official Full Name
trafficking protein particle complex 4provided by MGI
Primary source
MGI:MGI:1926211
See related
Ensembl:ENSMUSG00000032112
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Sb; Sbd; TRS; Sbdn; HSPC1; PTD00; TRS23; PTD009; Sdcbp2; HSPC172; AI303617; 1500017G03Rik
Expression
Ubiquitous expression in CNS E18 (RPKM 46.5), CNS E14 (RPKM 40.2) and 28 other tissues See more
Orthologs
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Genomic context

See Trappc4 in Genome Data Viewer
Location:
9; 9 A5.2
Exon count:
5
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (44315052..44318845, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (44403755..44407548, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (44211842..44215631, complement)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 26306 Neighboring gene solute carrier family 37 (glucose-6-phosphate transporter), member 4 Neighboring gene microRNA 7085 Neighboring gene ribosomal protein S25 Neighboring gene coiled-coil domain containing 84 Neighboring gene forkhead box R1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in autophagy ISO
Inferred from Sequence Orthology
more info
 
involved_in dendrite development IDA
Inferred from Direct Assay
more info
PubMed 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport ISO
Inferred from Sequence Orthology
more info
 
involved_in vesicle-mediated transport TAS
Traceable Author Statement
more info
PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 
located_in Golgi stack IDA
Inferred from Direct Assay
more info
PubMed 
part_of TRAPP complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of TRAPP complex IDA
Inferred from Direct Assay
more info
PubMed 
part_of TRAPP complex ISO
Inferred from Sequence Orthology
more info
 
located_in cell junction IEA
Inferred from Electronic Annotation
more info
 
located_in dendrite IDA
Inferred from Direct Assay
more info
PubMed 
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 
located_in plasma membrane TAS
Traceable Author Statement
more info
 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 
located_in synapse IDA
Inferred from Direct Assay
more info
PubMed 
located_in synaptic vesicle IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
trafficking protein particle complex subunit 4
Names
TRS23 homolog
synbindin
syndecan binding protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_021789.2NP_068561.1  trafficking protein particle complex subunit 4

    See identical proteins and their annotated locations for NP_068561.1

    Status: PROVISIONAL

    Source sequence(s)
    BC038898
    Consensus CDS
    CCDS23109.1
    UniProtKB/Swiss-Prot
    Q9ES56
    UniProtKB/TrEMBL
    Q544R8
    Related
    ENSMUSP00000034623.7, ENSMUST00000034623.8
    Conserved Domains (1) summary
    cd14856
    Location:4205
    TRAPPC4_synbindin; Trafficking protein particle complex subunit 4

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    44315052..44318845 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036155165.1XP_036011058.1  trafficking protein particle complex subunit 4 isoform X1

    Conserved Domains (1) summary
    cl38905
    Location:4599
    longin-like; Longin-like domains
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