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tbx3a T-box transcription factor 3a [ Danio rerio (zebrafish) ]

Gene ID: 556870, updated on 20-Nov-2021

Summary

Official Symbol
tbx3aprovided by ZNC
Official Full Name
T-box transcription factor 3aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-070209-80
See related
Ensembl:ENSDARG00000002216
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
tbx3; tbxb; tbx-b; tbx3b; zgc:158110
Orthologs
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Genomic context

See tbx3a in Genome Data Viewer
Location:
chromosome: 5
Exon count:
7
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (72316803..72324371, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (71532297..71539865, complement)
103 previous assembly Zv9 (GCF_000002035.4) 5 NC_007116.5 (75416715..75424283)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101882981 Neighboring gene T-box transcription factor 5a Neighboring gene lectin, mannose-binding 2-like a Neighboring gene mitochondrial fission process 1

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
involved_in cardiac chamber development IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in cell fate specification IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in central nervous system development IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within embryonic heart tube development IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in heart looping IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in positive regulation of cell population proliferation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
T-box transcription factor TBX3a
Names
T-box 3
T-box 3a
T-box 3b
T-box gene B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001101670.2NP_001095140.2  T-box transcription factor TBX3a

    Status: VALIDATED

    Source sequence(s)
    CU181811
    UniProtKB/TrEMBL
    B8JKS6
    Related
    ENSDARP00000025722.8, ENSDART00000006380.9
    Conserved Domains (2) summary
    pfam12598
    Location:298385
    TBX; T-box transcription factor
    cd00182
    Location:99282
    TBOX; T-box DNA binding domain of the T-box family of transcriptional regulators. The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA ...

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    72316803..72324371 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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