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Copg1 coatomer protein complex, subunit gamma 1 [ Mus musculus (house mouse) ]

Gene ID: 54161, updated on 6-May-2021

Summary

Official Symbol
Copg1provided by MGI
Official Full Name
coatomer protein complex, subunit gamma 1provided by MGI
Primary source
MGI:MGI:1858696
See related
Ensembl:ENSMUSG00000030058
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Co; Copg; D6Wsu16; AU019265; BC056168; D6Ertd71; D6Wsu16e; D6Ertd71e
Expression
Ubiquitous expression in cerebellum adult (RPKM 31.9), limb E14.5 (RPKM 28.3) and 28 other tissues See more
Orthologs
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Genomic context

See Copg1 in Genome Data Viewer
Location:
6 D1; 6 39.13 cM
Exon count:
24
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (87864801..87890577)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (87887819..87913595)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (87837934..87863589)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene ISY1 splicing factor homolog Neighboring gene cellular nucleic acid binding protein Neighboring gene 5-hydroxymethylcytosine (hmC) binding, ES cell specific Neighboring gene eukaryotic translation elongation factor 1 alpha 1 pseudogene Neighboring gene ribosomal protein S19, pseudogene 9

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC66965

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within establishment of Golgi localization ISO
Inferred from Sequence Orthology
more info
 
involved_in intra-Golgi vesicle-mediated transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 
involved_in organelle transport along microtubule IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within organelle transport along microtubule ISO
Inferred from Sequence Orthology
more info
 
involved_in protein secretion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within protein transport IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
part_of COPI vesicle coat IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in Golgi apparatus ISO
Inferred from Sequence Orthology
more info
 
is_active_in Golgi membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in Golgi membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in Golgi membrane ISO
Inferred from Sequence Orthology
more info
 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
 
is_active_in endoplasmic reticulum IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
is_active_in endoplasmic reticulum-Golgi intermediate compartment IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
part_of membrane coat IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
coatomer subunit gamma-1
Names
coatomer subunit gamma
gamma-1-COP
gamma-1-coat protein
gamma-COP
gamma-coat protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_017477.2NP_059505.1  coatomer subunit gamma-1 isoform 1

    See identical proteins and their annotated locations for NP_059505.1

    Status: PROVISIONAL

    Source sequence(s)
    AC153872
    Consensus CDS
    CCDS39549.1
    UniProtKB/Swiss-Prot
    Q9QZE5
    Related
    ENSMUSP00000109237.4, ENSMUST00000113607.10
    Conserved Domains (2) summary
    sd00044
    Location:398423
    HEAT; HEAT repeat [structural motif]
    cl26699
    Location:7869
    COP-gamma_platf; Coatomer gamma subunit appendage platform subdomain
  2. NM_201244.1NP_957696.1  coatomer subunit gamma-1 isoform 2

    See identical proteins and their annotated locations for NP_957696.1

    Status: PROVISIONAL

    Source sequence(s)
    BC056168
    Consensus CDS
    CCDS39550.1
    UniProtKB/TrEMBL
    Q7TNQ1
    Related
    ENSMUSP00000050858.6, ENSMUST00000049966.6
    Conserved Domains (1) summary
    COG5240
    Location:7107
    SEC21; Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    87864801..87890577
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001785155.1 RNA Sequence

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