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PRPF19 pre-mRNA processing factor 19 [ Pan troglodytes (chimpanzee) ]

Gene ID: 451228, updated on 24-Apr-2021

Summary

Official Symbol
PRPF19provided by VGNC
Official Full Name
pre-mRNA processing factor 19provided by VGNC
Primary source
VGNC:VGNC:1039
Locus tag
CK820_G0030874
See related
Ensembl:ENSPTRG00000003724
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
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Genomic context

See PRPF19 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
17
Annotation release Status Assembly Chr Location
105 current Clint_PTRv2 (GCF_002880755.1) 11 NC_036890.1 (56757698..56773575, complement)
104 previous assembly Pan_tro 3.0 (GCF_000001515.7) 11 NC_006478.4 (60739961..60755997, complement)

Chromosome 11 - NC_036890.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 86 Neighboring gene prostaglandin D2 receptor 2 Neighboring gene zona pellucida glycoprotein 1 Neighboring gene uncharacterized LOC107967098 Neighboring gene transmembrane protein 109 Neighboring gene transmembrane protein 132A Neighboring gene solute carrier family 15 member 3

Genomic regions, transcripts, and products

General gene information

Markers

Homology

General protein information

Preferred Names
pre-mRNA-processing factor 19
Names
PRP19/PSO4 pre-mRNA processing factor 19 homolog
XP_001142421.1
XP_009458713.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pan troglodytes Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Clint_PTRv2 Primary Assembly

Genomic

  1. NC_036890.1 Reference Clint_PTRv2 Primary Assembly

    Range
    56757698..56773575 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001142421.5XP_001142421.1  pre-mRNA-processing factor 19 isoform X1

    See identical proteins and their annotated locations for XP_001142421.1

    UniProtKB/TrEMBL
    H2Q3T2
    Related
    ENSPTRP00000006406.4
    Conserved Domains (4) summary
    cd00200
    Location:223503
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:224262
    7WD40; WD40 repeat [structural motif]
    cd16656
    Location:456
    RING-Ubox_PRP19; U-box domain, a modified RING finger, found in pre-mRNA-processing factor 19 (Prp19) and similar proteins
    pfam08606
    Location:69133
    Prp19; Prp19/Pso4-like
  2. XM_009460438.3XP_009458713.1  pre-mRNA-processing factor 19 isoform X2

    See identical proteins and their annotated locations for XP_009458713.1

    Conserved Domains (3) summary
    cd00200
    Location:138418
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:139177
    7WD40; WD40 repeat [structural motif]
    pfam08606
    Location:148
    Prp19; Prp19/Pso4-like
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