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ccn1 cellular communication network factor 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 448140, updated on 30-Sep-2021

Summary

Official Symbol
ccn1provided by Xenbase
Official Full Name
cellular communication network factor 1provided by Xenbase
Primary source
Xenbase:XB-GENE-482634
See related
EnsemblRapid:ENSXETG00000003094
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
gig1; cyr61; sumo3; Xcyr61; igfbp10
Orthologs
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Genomic context

See ccn1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
5
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 4 NC_030680.2 (77023489..77026362, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 4 NC_030680.1 (29009567..29012441, complement)

Chromosome 4 - NC_030680.2Genomic Context describing neighboring genes Neighboring gene collagen, type XXIV, alpha 1 Neighboring gene zinc finger, HIT-type containing 6 Neighboring gene dimethylarginine dimethylaminohydrolase 1 Neighboring gene BCL10, immune signaling adaptor

Genomic regions, transcripts, and products

General gene information

Homology

Clone Names

  • MGC69281, MGC69539

General protein information

Preferred Names
small ubiquitin-related modifier 3
Names
SUMO-3
cysteine rich angiogenic inducer 61

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001105514.1NP_001098984.1  small ubiquitin-related modifier 3 precursor

    Status: PROVISIONAL

    Source sequence(s)
    CU025129
    Related
    ENSXETP00000006718.3, ENSXETT00000006718.4
    Conserved Domains (4) summary
    smart00209
    Location:227267
    TSP1; Thrombospondin type 1 repeats
    smart00214
    Location:100159
    VWC; von Willebrand factor (vWF) type C domain
    pfam00219
    Location:2678
    IGFBP; Insulin-like growth factor binding protein
    cl21545
    Location:289371
    GHB_like; Glycoprotein hormone beta chain homologues

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    77023489..77026362 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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