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LOC4327660 probable V-type proton ATPase subunit d [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4327660, updated on 2-Mar-2021

Summary

Gene symbol
LOC4327660
Gene description
probable V-type proton ATPase subunit d
Locus tag
OSNPB_010587000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flower buds (RPKM 116.3), flowers (RPKM 109.3) and 6 other tissues See more
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Genomic context

See LOC4327660 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
10
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (22855511..22859739, complement)

Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene probable WRKY transcription factor 72 Neighboring gene plant cysteine oxidase 1 Neighboring gene protein QUIRKY Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

General gene information

Homology

  • Homologs of the LOC4327660 gene: The LOC4327660 gene is conserved in human, chimpanzee, dog, cow, mouse, rat, chicken, zebrafish, fruit fly, mosquito, C.elegans, S.cerevisiae, K.lactis, E.gossypii, S.pombe, M.oryzae, N.crassa, A.thaliana, rice, and frog.
  • Orthologs

General protein information

Preferred Names
probable V-type proton ATPase subunit d
Names
LOC_Os01g40470
P0700A11.10
V-ATPase subunit d
Vacuolar proton pump subunit d
putative Vacuolar ATP synthase subunit d

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

    Range
    22855511..22859739 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015766735.1XP_015622221.1  probable V-type proton ATPase subunit d

    UniProtKB/Swiss-Prot
    Q8RU33
    Conserved Domains (1) summary
    pfam01992
    Location:16338
    vATP-synt_AC39; ATP synthase (C/AC39) subunit
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