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NAIF1 nuclear apoptosis inducing factor 1 [ Gallus gallus (chicken) ]

Gene ID: 417229, updated on 7-Aug-2021

Summary

Official Symbol
NAIF1provided by CGNC
Official Full Name
nuclear apoptosis inducing factor 1provided by CGNC
Primary source
CGNC:3796
See related
Ensembl:ENSGALG00000027734
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
C9orf90
Orthologs
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Genomic context

See NAIF1 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
5
Annotation release Status Assembly Chr Location
105 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 17 NC_052548.1 (5495690..5499913)
105 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.1) 17 NC_052589.1 (4909749..4913561)
104 previous assembly GRCg6a (GCF_000002315.5) 17 NC_006104.5 (5192459..5196343)
103 previous assembly Gallus_gallus-5.0 (GCF_000002315.4) 17 NC_006104.4 (5358112..5361997)

Chromosome 17 - NC_052548.1Genomic Context describing neighboring genes Neighboring gene alpha-1-acid glycoprotein 1-like Neighboring gene orosomucoid 1 (ovoglycoprotein) Neighboring gene solute carrier family 25 member 25 Neighboring gene family with sequence similarity 102 member A Neighboring gene dolichyl-phosphate mannosyltransferase subunit 2, regulatory

Genomic regions, transcripts, and products

General gene information

Homology

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in homologous chromosome pairing at meiosis IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in meiotic DNA double-strand break processing involved in reciprocal meiotic recombination IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in oogenesis IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in regulation of mitochondrial membrane permeability involved in apoptotic process ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
involved_in spermatogenesis IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in central element IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 
located_in nucleus ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 

General protein information

Preferred Names
nuclear apoptosis-inducing factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001030692.2NP_001025863.2  nuclear apoptosis-inducing factor 1

    Status: VALIDATED

    Source sequence(s)
    AADN05000150, BU335078
    UniProtKB/TrEMBL
    A0A1D5PLS0
    Related
    ENSGALP00000053790.1, ENSGALT00000066832.2
    Conserved Domains (2) summary
    pfam11932
    Location:207303
    DUF3450; Protein of unknown function (DUF3450)
    pfam13873
    Location:1289
    Myb_DNA-bind_5; Myb/SANT-like DNA-binding domain

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052548.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    5495690..5499913
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040649076.1XP_040505010.1  nuclear apoptosis-inducing factor 1 isoform X1

    Conserved Domains (1) summary
    cl39057
    Location:198323
    MS_channel; Mechanosensitive ion channel
  2. XM_015279495.3XP_015134981.1  nuclear apoptosis-inducing factor 1 isoform X2

    UniProtKB/TrEMBL
    A0A1D5PLS0
    Conserved Domains (2) summary
    pfam11932
    Location:207303
    DUF3450; Protein of unknown function (DUF3450)
    pfam13873
    Location:1289
    Myb_DNA-bind_5; Myb/SANT-like DNA-binding domain
  3. XM_025156077.2XP_025011845.1  nuclear apoptosis-inducing factor 1 isoform X2

    Conserved Domains (2) summary
    pfam11932
    Location:207303
    DUF3450; Protein of unknown function (DUF3450)
    pfam13873
    Location:1289
    Myb_DNA-bind_5; Myb/SANT-like DNA-binding domain

RNA

  1. XR_001464431.2 RNA Sequence

  2. XR_003078046.2 RNA Sequence

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052589.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    4909749..4913561
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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