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ccn1 cellular communication network factor 1 [ Danio rerio (zebrafish) ]

Gene ID: 403033, updated on 16-Oct-2021

Summary

Official Symbol
ccn1provided by ZNC
Official Full Name
cellular communication network factor 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-3
See related
Ensembl:ENSDARG00000023062
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
cyr61; zgc:85866; zCyr61-c23
Orthologs
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Genomic context

See ccn1 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (45456380..45462757)
105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (45721185..45727562)
103 previous assembly Zv9 (GCF_000002035.4) 23 NC_007134.5 (45832500..45838877)

Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene aminoacyl tRNA synthetase complex interacting multifunctional protein 1b Neighboring gene nephronectin-like Neighboring gene zinc finger HIT-type containing 6 Neighboring gene collagen alpha-1(XXIV) chain-like

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables heparin binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables insulin-like growth factor binding IEA
Inferred from Electronic Annotation
more info
 
enables integrin binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within fin regeneration IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in negative regulation of cell death IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in signal transduction IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within signal transduction IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in extracellular matrix IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
CCN family member 1
Names
cysteine-rich, angiogenic inducer, 61

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001001826.2NP_001001826.2  CCN family member 1 precursor

    Status: VALIDATED

    Source sequence(s)
    CU672235
    UniProtKB/TrEMBL
    F1QL10
    Related
    ENSDARP00000036965.5, ENSDART00000036631.6
    Conserved Domains (3) summary
    smart00041
    Location:279348
    CT; C-terminal cystine knot-like domain (CTCK)
    smart00214
    Location:95154
    VWC; von Willebrand factor (vWF) type C domain
    pfam00219
    Location:2173
    IGFBP; Insulin-like growth factor binding protein

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007134.7 Reference GRCz11 Primary Assembly

    Range
    45456380..45462757
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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