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atp6v0d1 ATPase H+ transporting V0 subunit d1 [ Danio rerio (zebrafish) ]

Gene ID: 322811, updated on 22-Jun-2021

Summary

Official Symbol
atp6v0d1provided by ZNC
Official Full Name
ATPase H+ transporting V0 subunit d1provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-1531
See related
Ensembl:ENSDARG00000069090
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
ct; fb73h07; zgc:63769; wu:fb73h07
Orthologs
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Genomic context

See atp6v0d1 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
8
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (35086396..35094933)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (34814919..34823456)
103 previous assembly Zv9 (GCF_000002035.4) 7 NC_007118.5 (36541076..36549613)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene chymotrypsinogen B, tandem duplicate 1 Neighboring gene agouti related neuropeptide Neighboring gene hydroxysteroid (11-beta) dehydrogenase 2 Neighboring gene zinc finger DHHC-type containing 1

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables proton transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within cell projection organization IEA
Inferred from Electronic Annotation
more info
 
involved_in cellular iron ion homeostasis ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in cellular response to increased oxygen levels ISS
Inferred from Sequence or Structural Similarity
more info
 
acts_upstream_of_or_within cilium assembly IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in cilium assembly IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within eye pigment granule organization IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within heart looping IGI
Inferred from Genetic Interaction
more info
PubMed 
acts_upstream_of_or_within heart looping IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within ion transport IEA
Inferred from Electronic Annotation
more info
 
involved_in left/right axis specification IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within melanosome organization IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within neuromast hair cell development IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within pronephric duct development IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within proton transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within response to copper ion IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within retina development in camera-type eye IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within retinal pigment epithelium development IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in vacuolar acidification IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in vacuolar transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
colocalizes_with centrosome ISS
Inferred from Sequence or Structural Similarity
more info
 
is_active_in early endosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
part_of plasma membrane proton-transporting V-type ATPase complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of proton-transporting V-type ATPase, V0 domain IEA
Inferred from Electronic Annotation
more info
 
part_of vacuolar proton-transporting V-type ATPase complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
V-type proton ATPase subunit d 1
Names
ATPase, H+ transporting, V0 subunit D
ATPase, H+ transporting, lysosomal V0 subunit d1
V-ATPase subunit d 1
cto
vacuolar proton pump subunit d 1
NP_955914.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_199620.1NP_955914.1  V-type proton ATPase subunit d 1

    See identical proteins and their annotated locations for NP_955914.1

    Status: PROVISIONAL

    Source sequence(s)
    BC056822
    UniProtKB/Swiss-Prot
    Q6PGV1
    Related
    ENSDARP00000091027.3, ENSDART00000100254.5
    Conserved Domains (2) summary
    COG1527
    Location:13349
    NtpC; Archaeal/vacuolar-type H+-ATPase subunit C/Vma6 [Energy production and conversion]
    pfam01992
    Location:15344
    vATP-synt_AC39; ATP synthase (C/AC39) subunit

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    35086396..35094933
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394699.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    352231..360768
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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