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Csprs component of Sp100-rs [ Rattus norvegicus (Norway rat) ]

Gene ID: 316579, updated on 6-May-2021

Summary

Official Symbol
Csprsprovided by RGD
Official Full Name
component of Sp100-rsprovided by RGD
Primary source
RGD:1310830
See related
Ensembl:ENSRNOG00000017256
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Lung (RPKM 9.6), Testes (RPKM 6.6) and 4 other tissues See more
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Genomic context

See Csprs in Genome Data Viewer
Location:
9q35
Exon count:
3
Annotation release Status Assembly Chr Location
108 current mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (86165783..86174596)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (92559533..92566923)

Chromosome 9 - NC_051344.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102550706 Neighboring gene solute carrier family 16, member 14 Neighboring gene uncharacterized LOC120094727 Neighboring gene SP110 nuclear body protein Neighboring gene SP140 nuclear body protein Neighboring gene SP100 nuclear antigen

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables G protein-coupled receptor activity IEA
Inferred from Electronic Annotation
more info
 
enables odorant binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables olfactory receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
involved_in G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 
involved_in detection of chemical stimulus involved in sensory perception of smell IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in integral component of membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRatBN7.2 Primary Assembly

Genomic

  1. NC_051344.1 Reference mRatBN7.2 Primary Assembly

    Range
    86165783..86174596
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006245490.3XP_006245552.1  olfactory receptor 11G2

    See identical proteins and their annotated locations for XP_006245552.1

    Conserved Domains (1) summary
    pfam00001
    Location:106273
    7tm_1; 7 transmembrane receptor (rhodopsin family)
  2. XM_006245489.3XP_006245551.1  olfactory receptor 11G2

    See identical proteins and their annotated locations for XP_006245551.1

    Conserved Domains (1) summary
    pfam00001
    Location:106273
    7tm_1; 7 transmembrane receptor (rhodopsin family)
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