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Atp6v0d1 ATPase H+ transporting V0 subunit D1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 291969, updated on 22-Jun-2021

Summary

Official Symbol
Atp6v0d1provided by RGD
Official Full Name
ATPase H+ transporting V0 subunit D1provided by RGD
Primary source
RGD:1306159
See related
Ensembl:ENSRNOG00000017235
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Ac39
Expression
Biased expression in Kidney (RPKM 1097.1), Brain (RPKM 895.7) and 9 other tissues See more
Orthologs
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Genomic context

See Atp6v0d1 in Genome Data Viewer
Location:
19q12
Exon count:
9
Annotation release Status Assembly Chr Location
108 current mRatBN7.2 (GCF_015227675.2) 19 NC_051354.1 (33403352..33447357, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 19 NC_005118.4 (37481782..37525762, complement)

Chromosome 19 - NC_051354.1Genomic Context describing neighboring genes Neighboring gene zinc finger, DHHC-type containing 1 Neighboring gene uncharacterized LOC120098612 Neighboring gene hydroxysteroid 11-beta dehydrogenase 2 Neighboring gene small nuclear ribonucleoprotein E-like Neighboring gene agouti related neuropeptide Neighboring gene RHO family interacting cell polarization regulator 1

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables protein-containing complex binding IPI
Inferred from Physical Interaction
more info
PubMed 
contributes_to proton-transporting ATPase activity, rotational mechanism ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in brain development IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in cellular iron ion homeostasis ISO
Inferred from Sequence Orthology
more info
 
involved_in cellular response to increased oxygen levels ISO
Inferred from Sequence Orthology
more info
 
involved_in proton transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
involved_in vacuolar acidification IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in vacuolar transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
located_in apical plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in axon terminus IDA
Inferred from Direct Assay
more info
PubMed 
colocalizes_with centrosome ISO
Inferred from Sequence Orthology
more info
 
is_active_in early endosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in early endosome ISO
Inferred from Sequence Orthology
more info
 
located_in membrane ISO
Inferred from Sequence Orthology
more info
 
located_in neuron projection IDA
Inferred from Direct Assay
more info
PubMed 
part_of plasma membrane proton-transporting V-type ATPase complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of protein-containing complex IDA
Inferred from Direct Assay
more info
PubMed 
part_of proton-transporting V-type ATPase, V0 domain IEA
Inferred from Electronic Annotation
more info
 
located_in synaptic vesicle IDA
Inferred from Direct Assay
more info
PubMed 
part_of vacuolar proton-transporting V-type ATPase complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of vacuolar proton-transporting V-type ATPase complex ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
V-type proton ATPase subunit d 1
Names
ATPase, H+ transporting, V0 subunit D
ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1
ATPase, H+ transporting, lysosomal V0 subunit D1
physophilin
NP_001011927.1
XP_038953544.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001011927.1NP_001011927.1  V-type proton ATPase subunit d 1

    See identical proteins and their annotated locations for NP_001011927.1

    Status: PROVISIONAL

    Source sequence(s)
    BC088462
    UniProtKB/TrEMBL
    Q5M7T6
    Related
    ENSRNOP00000023606.4, ENSRNOT00000023606.6
    Conserved Domains (1) summary
    pfam01992
    Location:16344
    vATP-synt_AC39; ATP synthase (C/AC39) subunit

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRatBN7.2 Primary Assembly

Genomic

  1. NC_051354.1 Reference mRatBN7.2 Primary Assembly

    Range
    33403352..33447357 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039097616.1XP_038953544.1  V-type proton ATPase subunit d 1 isoform X1

    Conserved Domains (1) summary
    pfam01992
    Location:1267
    vATP-synt_AC39; ATP synthase (C/AC39) subunit
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