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U2af1l4 U2 small nuclear RNA auxiliary factor 1-like 4 [ Mus musculus (house mouse) ]

Gene ID: 233073, updated on 23-Jun-2021

Summary

Official Symbol
U2af1l4provided by MGI
Official Full Name
U2 small nuclear RNA auxiliary factor 1-like 4provided by MGI
Primary source
MGI:MGI:2678374
See related
Ensembl:ENSMUSG00000078765
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
U2af2; U2af26; AA407033; AF419339; AI451269; AW553050
Expression
Ubiquitous expression in adrenal adult (RPKM 30.6), duodenum adult (RPKM 22.1) and 28 other tissues See more
Orthologs
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Genomic context

See U2af1l4 in Genome Data Viewer
Location:
7; 7 B1
Exon count:
8
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (30262765..30264789)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (30563340..30565364)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (31348359..31350383)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene microRNA 9769 Neighboring gene heat shock protein, alpha-crystallin-related, B6 Neighboring gene lin-37 DREAM MuvB core complex component Neighboring gene presenilin enhancer gamma secretase subunit Neighboring gene IGF-like family receptor 1 Neighboring gene lysine (K)-specific methyltransferase 2B

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables pre-mRNA 3'-splice site binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
part_of U2AF complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of spliceosomal complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
splicing factor U2AF 26 kDa subunit
Names
U2 auxiliary factor 26
U2 small nuclear RNA auxiliary factor 1-like protein 4
U2AF1-like 4
auxiliary factor 26

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_170760.3NP_739566.1  splicing factor U2AF 26 kDa subunit

    See identical proteins and their annotated locations for NP_739566.1

    Status: PROVISIONAL

    Source sequence(s)
    AC167970
    Consensus CDS
    CCDS21100.1
    UniProtKB/Swiss-Prot
    Q8BGJ9
    Related
    ENSMUSP00000039406.10, ENSMUST00000043273.16
    Conserved Domains (2) summary
    pfam00642
    Location:149175
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    cd12538
    Location:43146
    RRM_U2AF35; RNA recognition motif (RRM) found in U2 small nuclear ribonucleoprotein auxiliary factor U2AF 35 kDa subunit (U2AF35)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    30262765..30264789
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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