Format

Send to:

Choose Destination

Scd2 stearoyl-Coenzyme A desaturase 2 [ Mus musculus (house mouse) ]

Gene ID: 20250, updated on 9-Oct-2021

Summary

Official Symbol
Scd2provided by MGI
Official Full Name
stearoyl-Coenzyme A desaturase 2provided by MGI
Primary source
MGI:MGI:98240
See related
Ensembl:ENSMUSG00000025203
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Scd-; swty; Scd-2; Mir5114; mir-5114
Expression
Ubiquitous expression in cerebellum adult (RPKM 186.3), subcutaneous fat pad adult (RPKM 170.4) and 25 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Scd2 in Genome Data Viewer
Location:
19 C3; 19 37.98 cM
Exon count:
6
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (44282115..44295303)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (44293676..44306864)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (44368166..44381354)

Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 54046 Neighboring gene predicted gene, 35183 Neighboring gene predicted gene, 41853 Neighboring gene microRNA 5114 Neighboring gene stearoyl-coenzyme A desaturase 4 Neighboring gene stearoyl-Coenzyme A desaturase 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2)  1 citation
  • Chemically induced (ENU) (1) 

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Component Evidence Code Pubs
located_in endoplasmic reticulum IDA
Inferred from Direct Assay
more info
PubMed 
located_in endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
 
is_active_in endoplasmic reticulum membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in endoplasmic reticulum membrane ISO
Inferred from Sequence Orthology
more info
 
is_active_in integral component of endoplasmic reticulum membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in integral component of membrane ISO
Inferred from Sequence Orthology
more info
 
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in nucleolus ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
stearoyl-CoA desaturase 2
Names
Acyl-CoA desaturase 2 (Stearoyl-CoA desaturase 2) (Fatty acid desaturase 2) (Delta(9)-desaturase 2)
delta(9)-desaturase 2
fatty acid desaturase 2
NP_033154.2

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_009128.2NP_033154.2  stearoyl-CoA desaturase 2

    See identical proteins and their annotated locations for NP_033154.2

    Status: VALIDATED

    Source sequence(s)
    AK083922, AK159413, CF168778, CJ110442, CJ242760
    Consensus CDS
    CCDS29848.1
    UniProtKB/Swiss-Prot
    P13011
    Related
    ENSMUSP00000026221.6, ENSMUST00000026221.7
    Conserved Domains (1) summary
    cd03505
    Location:96336
    Delta9-FADS-like; The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide ...

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000085.7 Reference GRCm39 C57BL/6J

    Range
    44282115..44295303
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center