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Saa3 serum amyloid A 3 [ Mus musculus (house mouse) ]

Gene ID: 20210, updated on 6-Sep-2021

Summary

Official Symbol
Saa3provided by MGI
Official Full Name
serum amyloid A 3provided by MGI
Primary source
MGI:MGI:98223
See related
Ensembl:ENSMUSG00000040026
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Sa; l7; l7R3; Saa-3; AV098916
Expression
Biased expression in liver E18 (RPKM 11.8), genital fat pad adult (RPKM 2.2) and 8 other tissues See more
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Genomic context

See Saa3 in Genome Data Viewer
Location:
7 B3; 7 30.51 cM
Exon count:
4
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (46361422..46365100, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (46711998..46719615, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (53967368..53971046, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene tryptophan hydroxylase 1 Neighboring gene serum amyloid A-like 1 Neighboring gene predicted gene, 31882 Neighboring gene serum amyloid A 4

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables Toll-like receptor 4 binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables chemoattractant activity IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 
located_in extracellular space IDA
Inferred from Direct Assay
more info
PubMed 
part_of high-density lipoprotein particle IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_011315.3NP_035445.1  serum amyloid A-3 protein precursor

    See identical proteins and their annotated locations for NP_035445.1

    Status: PROVISIONAL

    Source sequence(s)
    AC090122
    Consensus CDS
    CCDS21282.1
    UniProtKB/Swiss-Prot
    P04918
    Related
    ENSMUSP00000006956.8, ENSMUST00000006956.9
    Conserved Domains (1) summary
    pfam00277
    Location:23122
    SAA; Serum amyloid A protein

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    46361422..46365100 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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