Format

Send to:

Choose Destination

S100a10 S100 calcium binding protein A10 (calpactin) [ Mus musculus (house mouse) ]

Gene ID: 20194, updated on 23-Jun-2021

Summary

Official Symbol
S100a10provided by MGI
Official Full Name
S100 calcium binding protein A10 (calpactin)provided by MGI
Primary source
MGI:MGI:1339468
See related
Ensembl:ENSMUSG00000041959
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Ca; p1; 42C; CAL; CLP; p10; p11; CAL12; CLP11; Cal1l; AA409961; AL024248
Expression
Broad expression in large intestine adult (RPKM 148.7), placenta adult (RPKM 102.1) and 25 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See S100a10 in Genome Data Viewer
Location:
3 F2.1; 3 40.51 cM
Exon count:
3
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (93462424..93471952)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (93555117..93564645)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (93359039..93368567)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene S100 calcium binding protein A11 Neighboring gene predicted gene, 29950 Neighboring gene predicted gene, 40093 Neighboring gene chymotrypsin C (caldecrin) pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables calcium ion binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables calcium-dependent protein binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein homodimerization activity ISO
Inferred from Sequence Orthology
more info
 
enables transmembrane transporter binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables transmembrane transporter binding ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
part_of AnxA2-p11 complex ISO
Inferred from Sequence Orthology
more info
 
located_in collagen-containing extracellular matrix HDA PubMed 
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
 
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in extrinsic component of plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
colocalizes_with membrane raft ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
protein S100-A10
Names
S100 calcium binding protein A10 (calgizzarin)
S100 calcium-binding protein A10
calcium binding protein A11 (calgizzarin)
calpactin I light chain
calpactin-1 light chain
cellular ligand of annexin II

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_009112.2NP_033138.1  protein S100-A10

    See identical proteins and their annotated locations for NP_033138.1

    Status: VALIDATED

    Source sequence(s)
    AK161647, BU559648, D18288
    Consensus CDS
    CCDS38526.1
    UniProtKB/Swiss-Prot
    P08207
    UniProtKB/TrEMBL
    Q3TC45
    Related
    ENSMUSP00000036949.8, ENSMUST00000045756.14
    Conserved Domains (1) summary
    cl08302
    Location:393
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    93462424..93471952
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center