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elpc-3 Elongator complex protein 3 [ Caenorhabditis elegans ]

Gene ID: 179669, updated on 22-Aug-2021

Summary

Gene symbol
elpc-3
Gene description
Elongator complex protein 3
Primary source
WormBase:WBGene00014123
Locus tag
CELE_ZK863.3
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

See elpc-3 in Genome Data Viewer
Location:
chromosome: V
Exon count:
5
Sequence:
Chromosome: V; NC_003283.11 (12179497..12181410, complement)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene G_PROTEIN_RECEP_F1_2 domain-containing protein Neighboring gene ncRNA Neighboring gene C-type lectin domain-containing protein Neighboring gene U6 snRNA-specific terminal uridylyltransferase Neighboring gene Serpentine Receptor, class D (delta) Neighboring gene Uncharacterized protein

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

  • Homologs of the elpc-3 gene: The elpc-3 gene is conserved in human, chimpanzee, Rhesus monkey, dog, cow, mouse, rat, chicken, zebrafish, fruit fly, mosquito, S.cerevisiae, K.lactis, E.gossypii, S.pombe, M.oryzae, N.crassa, A.thaliana, rice, and frog.
  • Orthologs

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables 4 iron, 4 sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
 
enables N-acetyltransferase activity IEA
Inferred from Electronic Annotation
more info
 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 
enables acyltransferase activity IEA
Inferred from Electronic Annotation
more info
 
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 
enables iron-sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables phosphorylase kinase regulator activity ISS
Inferred from Sequence or Structural Similarity
more info
 
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
 
enables tRNA uridine(34) acetyltransferase activity IEA
Inferred from Electronic Annotation
more info
 
enables transferase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in embryonic morphogenesis IGI
Inferred from Genetic Interaction
more info
PubMed 
involved_in olfactory learning IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in oocyte development IGI
Inferred from Genetic Interaction
more info
PubMed 
involved_in regulation of protein kinase activity IEA
Inferred from Electronic Annotation
more info
 
involved_in regulation of transcription by RNA polymerase II ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in spermatogenesis IGI
Inferred from Genetic Interaction
more info
PubMed 
involved_in tRNA processing IEA
Inferred from Electronic Annotation
more info
 
involved_in tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in tRNA wobble uridine modification IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in translation IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in vulval development IGI
Inferred from Genetic Interaction
more info
PubMed 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in cytoplasm ISS
Inferred from Sequence or Structural Similarity
more info
 
part_of elongator holoenzyme complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
Elongator complex protein 3
NP_506055.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    12179497..12181410 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_073654.5NP_506055.2  Elongator complex protein 3 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_506055.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q23651
    Conserved Domains (1) summary
    TIGR01211
    Location:17542
    ELP3; radical SAM enzyme/protein acetyltransferase, ELP3 family
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