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Scn9a sodium voltage-gated channel alpha subunit 9 [ Dipodomys spectabilis (banner-tailed kangaroo rat) ]

Gene ID: 122120071, updated on 16-Oct-2021

Summary

Gene symbol
Scn9a
Gene description
sodium voltage-gated channel alpha subunit 9
Gene type
protein coding
RefSeq status
MODEL
Organism
Dipodomys spectabilis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Heteromyidae; Dipodomyinae; Dipodomys
Orthologs
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Genomic context

See Scn9a in Genome Data Viewer
Location:
chromosome: Un
Exon count:
30
Annotation release Status Assembly Chr Location
100 current ASM1905484v1 (GCF_019054845.1) Unplaced Scaffold NW_024870851.1 (8828827..8903639)

NW_024870851.1Genomic Context describing neighboring genes Neighboring gene sodium voltage-gated channel alpha subunit 7 Neighboring gene uncharacterized LOC122120056 Neighboring gene sodium channel protein type 1 subunit alpha Neighboring gene ubiquitin-40S ribosomal protein S27a-like Neighboring gene tetratricopeptide repeat domain 21B

Genomic regions, transcripts, and products

Genomic Sequence:
NW_024870851 Unplaced Scaffold Reference ASM1905484v1

General protein information

Preferred Names
sodium channel protein type 9 subunit alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Dipodomys spectabilis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1905484v1

Genomic

  1. NW_024870851.1 Reference ASM1905484v1

    Range
    8828827..8903639
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042694111.1XP_042550045.1  sodium channel protein type 9 subunit alpha isoform X1

    Conserved Domains (2) summary
    smart00015
    Location:18881910
    IQ; Calmodulin-binding motif
    cd13433
    Location:14581510
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
  2. XM_042694115.1XP_042550049.1  sodium channel protein type 9 subunit alpha isoform X5

    Conserved Domains (2) summary
    smart00015
    Location:18771899
    IQ; Calmodulin-binding motif
    cd13433
    Location:14471499
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
  3. XM_042694113.1XP_042550047.1  sodium channel protein type 9 subunit alpha isoform X3

    Conserved Domains (2) summary
    smart00015
    Location:18931915
    IQ; Calmodulin-binding motif
    cd13433
    Location:14631515
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
  4. XM_042694117.1XP_042550051.1  sodium channel protein type 9 subunit alpha isoform X7

    Conserved Domains (2) summary
    smart00015
    Location:18761898
    IQ; Calmodulin-binding motif
    cd13433
    Location:14461498
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
  5. XM_042694121.1XP_042550055.1  sodium channel protein type 9 subunit alpha isoform X10

    Conserved Domains (2) summary
    smart00015
    Location:18481870
    IQ; Calmodulin-binding motif
    cd13433
    Location:14181470
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
  6. XM_042694120.1XP_042550054.1  sodium channel protein type 9 subunit alpha isoform X9

    Conserved Domains (2) summary
    smart00015
    Location:18501872
    IQ; Calmodulin-binding motif
    cd13433
    Location:14201472
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
  7. XM_042694112.1XP_042550046.1  sodium channel protein type 9 subunit alpha isoform X2

    Conserved Domains (2) summary
    smart00015
    Location:18941916
    IQ; Calmodulin-binding motif
    cd13433
    Location:14641516
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
  8. XM_042694116.1XP_042550050.1  sodium channel protein type 9 subunit alpha isoform X6

    Conserved Domains (2) summary
    smart00015
    Location:18831905
    IQ; Calmodulin-binding motif
    cd13433
    Location:14531505
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
  9. XM_042694118.1XP_042550052.1  sodium channel protein type 9 subunit alpha isoform X8

    Conserved Domains (2) summary
    smart00015
    Location:18661888
    IQ; Calmodulin-binding motif
    cd13433
    Location:14361488
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
  10. XM_042694114.1XP_042550048.1  sodium channel protein type 9 subunit alpha isoform X4

    Conserved Domains (2) summary
    smart00015
    Location:18771899
    IQ; Calmodulin-binding motif
    cd13433
    Location:14471499
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
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