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tmprss2 transmembrane serine protease 2 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110533685, updated on 30-Sep-2021

Summary

Gene symbol
tmprss2
Gene description
transmembrane serine protease 2
See related
EnsemblRapid:ENSOMYG00000026497
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
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Genomic context

See tmprss2 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
14
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 10 NC_048574.1 (33665119..33678850)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 10 NC_035086.1 (29671521..29685233)

Chromosome 10 - NC_048574.1Genomic Context describing neighboring genes Neighboring gene collagenase 3 Neighboring gene acetyl-CoA acetyltransferase 1 Neighboring gene uncharacterized LOC118936922 Neighboring gene Down syndrome cell adhesion molecule a

Genomic regions, transcripts, and products

General protein information

Preferred Names
transmembrane protease serine 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048574.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    33665119..33678850
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021618133.2XP_021473808.1  transmembrane protease serine 2 isoform X1

    Related
    ENSOMYP00000057430.1, ENSOMYT00000062523.2
    Conserved Domains (4) summary
    smart00020
    Location:247475
    Tryp_SPc; Trypsin-like serine protease
    cd00112
    Location:112140
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
    pfam15494
    Location:145240
    SRCR_2; Scavenger receptor cysteine-rich domain
    NF033761
    Location:23105
    gliding_GltJ; adventurous gliding motility protein GltJ
  2. XM_021618134.2XP_021473809.1  transmembrane protease serine 2 isoform X2

    Conserved Domains (2) summary
    smart00020
    Location:152380
    Tryp_SPc; Trypsin-like serine protease
    cd00112
    Location:112140
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
  3. XM_036990091.1XP_036845986.1  transmembrane protease serine 2 isoform X1

    Conserved Domains (4) summary
    smart00020
    Location:247475
    Tryp_SPc; Trypsin-like serine protease
    cd00112
    Location:112140
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
    pfam15494
    Location:145240
    SRCR_2; Scavenger receptor cysteine-rich domain
    NF033761
    Location:23105
    gliding_GltJ; adventurous gliding motility protein GltJ
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