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msr1 macrophage scavenger receptor 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100494467, updated on 30-Sep-2021

Summary

Official Symbol
msr1provided by Xenbase
Official Full Name
macrophage scavenger receptor 1provided by Xenbase
Primary source
Xenbase:XB-GENE-486147
See related
EnsemblRapid:ENSXETG00000048410
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
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Genomic context

See msr1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 1 NC_030677.2 (41965874..41996664, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (32742626..32775076, complement)

Chromosome 1 - NC_030677.2Genomic Context describing neighboring genes Neighboring gene sarcoglycan zeta Neighboring gene microRNA mir-383 Neighboring gene tumor suppressor candidate 3 Neighboring gene fibroblast growth factor 20 Neighboring gene mitochondrial calcium uptake family member 3

Genomic regions, transcripts, and products

General gene information

Homology

General protein information

Preferred Names
macrophage scavenger receptor types I and II

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    41965874..41996664 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012955668.3XP_012811122.2  macrophage scavenger receptor types I and II

    Related
    ENSXETP00000118508.1, ENSXETT00000110283.1
    Conserved Domains (3) summary
    smart00202
    Location:316415
    SR; Scavenger receptor Cys-rich
    COG1196
    Location:79240
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam01391
    Location:239291
    Collagen; Collagen triple helix repeat (20 copies)
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