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LOC100136017 collagenase 3 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 100136017, updated on 30-Sep-2021

Summary

Gene symbol
LOC100136017
Gene description
collagenase 3
See related
EnsemblRapid:ENSOMYG00000025559
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

See LOC100136017 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
10
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 10 NC_048574.1 (33616384..33621122)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 10 NC_035086.1 (29620100..29624834)

Chromosome 10 - NC_048574.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110533683 Neighboring gene tsukushin-like Neighboring gene alkaline ceramidase 3 Neighboring gene acetyl-CoA acetyltransferase 1 Neighboring gene transmembrane serine protease 2

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048574.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    33616384..33621122
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021618131.2XP_021473806.1  collagenase 3

    Related
    ENSOMYP00000055656.1, ENSOMYT00000060588.2
    Conserved Domains (3) summary
    cd00094
    Location:283473
    HX; Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of ...
    pfam00413
    Location:107263
    Peptidase_M10; Matrixin
    pfam01471
    Location:2685
    PG_binding_1; Putative peptidoglycan binding domain
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