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Prcd photoreceptor disc component [ Mus musculus (house mouse) ]

Gene ID: 100038570, updated on 25-Nov-2021

Summary

Official Symbol
Prcdprovided by MGI
Official Full Name
photoreceptor disc componentprovided by MGI
Primary source
MGI:MGI:3649529
See related
Ensembl:ENSMUSG00000075410
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm11744
Expression
Broad expression in ovary adult (RPKM 6.5), adrenal adult (RPKM 5.2) and 18 other tissues See more
Orthologs
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Genomic context

See Prcd in Genome Data Viewer
Location:
11 E2; 11
Exon count:
9
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (116544603..116559224)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (116653889..116668389)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (116518422..116529703)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene ubiquitin-conjugating enzyme E2O Neighboring gene arylalkylamine N-acetyltransferase Neighboring gene rhomboid 5 homolog 2 Neighboring gene cytoglobin Neighboring gene small nucleolar RNA, C/D box 1C Neighboring gene small nucleolar RNA, C/D box 1B Neighboring gene small nucleolar RNA host gene 16

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables opsin binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables opsin binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in detection of light stimulus involved in visual perception TAS
Traceable Author Statement
more info
PubMed 
acts_upstream_of_or_within response to stimulus IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within visual perception IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in Golgi apparatus ISO
Inferred from Sequence Orthology
more info
 
located_in cell projection IEA
Inferred from Electronic Annotation
more info
 
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
 
located_in extracellular region ISO
Inferred from Sequence Orthology
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in photoreceptor outer segment IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in photoreceptor outer segment membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in photoreceptor outer segment membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in photoreceptor outer segment membrane ISO
Inferred from Sequence Orthology
more info
 
is_active_in photoreceptor outer segment membrane TAS
Traceable Author Statement
more info
PubMed 

General protein information

Preferred Names
photoreceptor disk component PRCD
Names
progressive rod cone degeneration protein
progressive rod-cone degeneration protein homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001163318.1NP_001156790.1  photoreceptor disk component PRCD precursor

    See identical proteins and their annotated locations for NP_001156790.1

    Status: VALIDATED

    Source sequence(s)
    AI846736, CK620045, DQ390337
    Consensus CDS
    CCDS48987.1
    UniProtKB/Swiss-Prot
    Q00LT2
    Related
    ENSMUSP00000112020.3, ENSMUST00000116318.3
    Conserved Domains (1) summary
    pfam15201
    Location:153
    Rod_cone_degen; Progressive rod-cone degeneration

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    116544603..116559224
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017314192.1XP_017169681.1  photoreceptor disk component PRCD isoform X1

    Conserved Domains (1) summary
    pfam15201
    Location:146
    Rod_cone_degen; Progressive rod-cone degeneration
  2. XM_017314193.1XP_017169682.1  photoreceptor disk component PRCD isoform X1

    Conserved Domains (1) summary
    pfam15201
    Location:146
    Rod_cone_degen; Progressive rod-cone degeneration
  3. XM_017314195.3XP_017169684.1  photoreceptor disk component PRCD isoform X1

    Conserved Domains (1) summary
    pfam15201
    Location:146
    Rod_cone_degen; Progressive rod-cone degeneration
  4. XM_017314196.3XP_017169685.1  photoreceptor disk component PRCD isoform X2

  5. XM_017314194.3XP_017169683.1  photoreceptor disk component PRCD isoform X1

    Conserved Domains (1) summary
    pfam15201
    Location:146
    Rod_cone_degen; Progressive rod-cone degeneration

RNA

  1. XR_001779849.2 RNA Sequence

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