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fastkd3 FAST kinase domains 3 [ Danio rerio (zebrafish) ]

Gene ID: 100003734, updated on 16-Oct-2021

Summary

Official Symbol
fastkd3provided by ZNC
Official Full Name
FAST kinase domains 3provided by ZNC
Primary source
ZFIN:ZDB-GENE-050208-273
See related
Ensembl:ENSDARG00000100440
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
im:7147223
Orthologs
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Genomic context

See fastkd3 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
7
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (59033927..59046724)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (58731493..58744097)
103 previous assembly Zv9 (GCF_000002035.4) 7 NC_007118.5 (65549763..65562411)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene transmembrane protein 236-like Neighboring gene 3-hydroxyacyl-CoA dehydratase 1 Neighboring gene uncharacterized LOC110439910 Neighboring gene charged multivesicular body protein 5b Neighboring gene DENN/MADD domain containing 4C

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
involved_in mitochondrial RNA processing IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in regulation of mitochondrial mRNA stability IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within regulation of mitochondrial mRNA stability IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 
is_active_in mitochondrial matrix IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
is_active_in ribonucleoprotein granule IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
FAST kinase domain-containing protein 3; FAST kinase domain-containing protein 3, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    59033927..59046724
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001338215.7XP_001338251.1  FAST kinase domain-containing protein 3, mitochondrial

    UniProtKB/TrEMBL
    A0A0R4IJX1
    Related
    ENSDARP00000136191.1, ENSDART00000168888.2
    Conserved Domains (3) summary
    smart00952
    Location:586643
    RAP; This domain is found in various eukaryotic species, particularly in apicomplexans
    pfam06743
    Location:404471
    FAST_1; FAST kinase-like protein, subdomain 1
    pfam08368
    Location:489572
    FAST_2; FAST kinase-like protein, subdomain 2
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